SCN Proteipedia

Hg_chrom7_TN10mRNA_13982

Organism: Heterodera glycines Gene Locus: chr7:4941882-4951805 Feature type: polypeptide

Protein Sequence

Length: 1,971

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.05	1.05	0.618	0.332	0.786	1.821	0.894	2.308	0.834	0.912	0.546	1.343	0.747	1.464	0.922	1.58	1.09	0.969	0.546	0.627	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13193	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Eggs_J4_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	KKLAVSSVQSSSKKQQK	—	—	2-31	0.923	—	—	0.000	—	—	0.310	0.101	0.015	0.270	0.172	0.283	0.292	0.039	0.667	0.148

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004571	1.000	2.000	Hsc_gene_10617.t1;Hsc_gene_10617.t2	Hsc_gene_10617.t1;Hsc_gene_10617.t2	—	Q8WZ42.4 Titin [Homo sapiens]	KAI1716858.1 fibronectin type III domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.867\|GO:0110165_0.855\|GO:0008150_0.823\|GO:0009987_0.717\|GO:0032501_0.659\|GO:0032502_0.649\|GO:0048856_0.649\|GO:0016020_0.611\|GO:0007275_0.601\|GO:0048731_0.567\|GO:0003674_0.542\|GO:0065007_0.513\|GO:0005622_0.508\|GO:0071944_0.505\|GO:0030154_0.503\|GO:0048869_0.503	IPR003961+794-888_796-902_904-984_904-993_906-997_916-992_1058-1145_1061-1155_1061-1158_1268-1370_1390-1520_1411-1524_1412-1511_1422-1517_1526-1629_1526-1630_1528-1630_1528-1643_1642-1726_1642-1740_1644-1744+\|IPR013783+780-900_901-998_1055-1163_1248-1382_1383-1519_1520-1635_1636-1746+\|IPR036116+858-993_1056-1159_1266-1526_1524-1745+\|IPR050713+1525-1752+	SM00060+794-888_904-984_1058-1145_1268-1370_1412-1511_1526-1629_1642-1726+	PF00041+916-992_1422-1517_1528-1630+Fibronectin_type_III_domain	—	PTHR46957+1525-1752+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-268;387-801;983-1076;1150-1330;1868-1920	5.000	269-386;802-982;1077-1149;1331-1867;1921-1971	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.904	212240.890	7.816	45.500	20.852	10.147	50.178	49.822	12.735	8.118	57.128

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	grey	7045.017	6694.638	4150.365	4209.224	4347.775	11511.038	5415.097	7385.477	2482.849	12567.205	8245.338

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.917	-0.807	0.128	—	1.420	-1.079	-0.735	—	-2.441	—	—	—	—

No JSON data available for plots.

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