Hg_chrom7_TN10mRNA_13984
Organism: Heterodera glycines Gene Locus: chr7:4962902-4966184 Feature type: polypeptideProtein Sequence
Length: 453
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.744 | 0.975 | 1.084 | 1.066 | 0.699 | 0.906 | 0.683 | 0.442 | 0.883 | 1.163 | 0.635 | 1.818 | 1.901 | 0.976 | 1.487 | 1.261 | 0.977 | 1.472 | 0.34 | 0.584 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13195
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RKSK,RRRR
|
17-66
|
0.988
|
— | — | — | — |
0.043
|
— | — |
0.058
|
0.023
|
0.017
|
0.158
|
0.206
|
0.476
|
0.589
|
0.057
|
0.790
|
0.243
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011212
|
1.000
|
1.000
|
Hsc_gene_10614.t1
|
Hsc_gene_10614.t1
|
— |
Q19707.1 Cuticlin-3 [Caenorhabditis elegans]
|
KAI3413802.1 Rio2, N-terminal [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.918|GO:0110165_0.910|GO:0071944_0.811|GO:0030312_0.560|GO:0031012_0.546|GO:0062023_0.545|GO:0060102_0.540
|
IPR001507+78-320_78-324+|IPR051962+54-445+
|
SM00241+78-324+
|
— | — |
PTHR22907+54-445+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-453
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.815
|
50422.050
|
8.250
|
8.000
|
22.517
|
10.155
|
45.033
|
54.967
|
12.362
|
10.155
|
54.967
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
305.407
|
651.726
|
423.245
|
136.012
|
63.108
|
70.558
|
91.302
|
217.336
|
67.300
|
665.697
|
409.241
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.852
|
-2.398
|
-1.529
|
-1.140
|
— | — |
1.520
|
-1.107
|
— | — | — | — | — |
No JSON data available for plots.