Hg_chrom7_TN10mRNA_13985
Organism: Heterodera glycines Gene Locus: chr7:4967010-4968498 Feature type: polypeptideProtein Sequence
Length: 241
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.724 | 0.772 | 1.433 | 1.002 | 0.553 | 1.17 | 0.889 | 0.622 | 1.383 | 1.514 | 0.629 | 1.709 | 1.498 | 0.878 | 1.609 | 1.008 | 0.68 | 1.006 | 0.638 | 0.61 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13196
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.939
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RTPKRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.332
|
0.384
|
0.043
|
0.632
|
0.072
|
0.186
|
0.110
|
0.154
|
0.090
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004572
|
2.000
|
1.000
|
Hsc_gene_10613.t1
|
— | — |
Q9W719.1 Hypoxanthine-guanine phosphoribosyltransferase [Gallus gallus]
|
KIH58925.1 hypoxanthine phosphoribosyltransferase [Ancylostoma duodenale]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.779|GO:0005575_0.695|GO:0110165_0.690|GO:0008150_0.670|GO:0005622_0.613|GO:0009987_0.610|GO:0003824_0.569|GO:0005488_0.548|GO:0016740_0.532|GO:0008152_0.523|GO:0016757_0.508|GO:0044238_0.506|GO:0004422_0.501|GO:0016763_0.501|GO:0106130_0.501
|
IPR000836+49-203_80-216+|IPR029057+2-239_25-231+|IPR050408+15-238+
|
— |
PF00156+80-216+Phosphoribosyl_transferase_domain
|
— |
PTHR43340+15-238+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-241
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
26954.140
|
7.886
|
3.500
|
24.481
|
9.544
|
43.568
|
56.432
|
13.278
|
11.203
|
50.207
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
midnightblue
|
382.170
|
623.040
|
426.680
|
272.279
|
295.103
|
346.889
|
704.122
|
322.027
|
387.726
|
259.894
|
314.680
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.775
|
-1.331
|
-0.540
|
— | — |
1.032
|
— |
1.275
|
— | — | — | — | — |
No JSON data available for plots.