Hg_chrom7_TN10mRNA_13986
Organism: Heterodera glycines Gene Locus: chr7:4967014-4968498 Feature type: polypeptideProtein Sequence
Length: 224
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 0.623 | 1.542 | 1.078 | 0.595 | 1.145 | 0.957 | 0.67 | 1.488 | 1.569 | 0.609 | 1.838 | 1.116 | 0.773 | 1.64 | 1.02 | 0.732 | 0.947 | 0.343 | 0.657 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13196
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.939
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RTPKRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.473
|
0.468
|
0.042
|
0.577
|
0.106
|
0.170
|
0.075
|
0.085
|
0.106
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004572
|
2.000
|
1.000
|
Hsc_gene_10613.t1
|
Hsc_gene_10613.t1
|
— |
Q9W719.1 Hypoxanthine-guanine phosphoribosyltransferase [Gallus gallus]
|
KIH58925.1 hypoxanthine phosphoribosyltransferase [Ancylostoma duodenale]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.787|GO:0005575_0.688|GO:0110165_0.686|GO:0008150_0.671|GO:0005622_0.614|GO:0009987_0.612|GO:0003824_0.573|GO:0005488_0.556|GO:0016740_0.535|GO:0008152_0.528|GO:0016757_0.510|GO:0044238_0.508|GO:0004422_0.503|GO:0016763_0.503|GO:0106130_0.503
|
IPR000836+44-199_49-186+|IPR029057+2-222_20-214+|IPR050408+15-221+
|
— |
PF00156+44-199+Phosphoribosyl_transferase_domain
|
— |
PTHR43340+15-221+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-224
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.685
|
24874.700
|
7.128
|
1.500
|
25.446
|
8.036
|
44.196
|
55.804
|
13.393
|
12.054
|
50.446
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
midnightblue
|
382.170
|
623.040
|
426.680
|
272.279
|
295.103
|
346.889
|
704.122
|
322.027
|
387.726
|
259.894
|
314.680
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.775
|
-1.331
|
-0.540
|
— | — |
1.032
|
— |
1.275
|
— | — | — | — | — |
No JSON data available for plots.