Hg_chrom7_TN10mRNA_13988
Organism: Heterodera glycines Gene Locus: chr7:4971271-4973652 Feature type: polypeptideProtein Sequence
Length: 401
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.609 | 0.986 | 0.771 | 1.204 | 1.122 | 1.279 | 0.475 | 1.496 | 1.219 | 1.281 | 0.831 | 2.2 | 1.247 | 0.863 | 1.069 | 1.425 | 0.94 | 0.982 | 0.959 | 0.66 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13198
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.940
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
FKVK,PPQKRLR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.894
|
0.216
|
0.005
|
0.373
|
0.043
|
0.104
|
0.054
|
0.038
|
0.071
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011214
|
1.000
|
1.000
|
Hsc_gene_10611.t2
|
Hsc_gene_10611.t1;Hsc_gene_10611.t2
|
— |
Q9NF14.1 BTB and MATH domain-containing protein 40 [Caenorhabditis elegans]
|
KAI3413804.1 BTB/POZ domain [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.882|GO:0008150_0.864|GO:0110165_0.787|GO:0005622_0.741|GO:0016020_0.698|GO:0043226_0.687|GO:0043229_0.667|GO:0009987_0.651|GO:0003674_0.608|GO:0043227_0.587|GO:0043231_0.566|GO:0005488_0.555|GO:0050896_0.545|GO:0065007_0.534|GO:0005515_0.525|GO:0051716_0.520|GO:0050789_0.512|GO:0008152_0.505
|
IPR000210+200-307_209-271_209-309+|IPR002083+33-167_34-168_38-145+|IPR008974+33-171+|IPR011333+177-310_188-307+
|
SM00225+209-309+
|
PF00651+200-307+BTB/POZ_domain|PF22486+38-145+MATH_domain
|
— |
PTHR24413+156-368+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-401
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.696
|
45498.280
|
7.201
|
5.000
|
24.688
|
10.973
|
49.626
|
50.374
|
13.716
|
10.973
|
47.880
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey60
|
1921.634
|
1058.820
|
927.975
|
1087.270
|
1679.404
|
3131.782
|
3788.082
|
2974.701
|
654.973
|
2422.908
|
1665.222
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.420
|
-0.099
|
0.338
|
0.595
|
0.914
|
0.285
|
— |
0.494
|
— | — | — | — | — |
No JSON data available for plots.