Hg_chrom7_TN10mRNA_13990
Organism: Heterodera glycines Gene Locus: chr7:4982020-4985368 Feature type: polypeptideProtein Sequence
Length: 695
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.619 | 1.305 | 1.073 | 0.893 | 1.343 | 1.144 | 0.531 | 0.647 | 1.087 | 1.186 | 1.134 | 2.116 | 1.759 | 0.719 | 0.94 | 1.048 | 0.778 | 0.763 | 1.217 | 1.227 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13200
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.928
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KKRP,NKANKKLKKN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.177
|
0.207
|
0.020
|
0.297
|
0.456
|
0.303
|
0.301
|
0.242
|
0.316
|
0.585
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001401
|
4.000
|
1.000
|
Hsc_gene_10610.t1
|
Hsc_gene_10610.t1
|
— |
O95395.1 Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3 [Homo sapiens]
|
KAI3418018.1 Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016757
|
GO:0008150_0.873|GO:0009987_0.743|GO:0003674_0.725|GO:0005575_0.663|GO:0110165_0.663|GO:0008152_0.641|GO:0003824_0.611|GO:0044237_0.610|GO:0005622_0.609|GO:0016740_0.550|GO:0043170_0.538|GO:0009058_0.534|GO:0044249_0.520|GO:0016757_0.517|GO:0016758_0.517|GO:0008194_0.513|GO:0016020_0.513|GO:0008375_0.510|GO:0009059_0.509|GO:0043226_0.506
|
IPR003406+294-557+
|
— |
PF02485+294-557+Core-2/I-Branching_enzyme
|
— |
PTHR46671+227-626+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
678-695
|
1.000
|
1-677
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.524
|
80599.870
|
5.331
|
-8.500
|
27.338
|
13.381
|
49.496
|
50.504
|
13.381
|
13.957
|
44.748
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
112.349
|
18.851
|
51.308
|
40.250
|
45.924
|
166.789
|
138.397
|
264.254
|
6.168
|
214.737
|
125.350
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.214
|
0.958
|
— | — |
1.875
|
— |
0.553
|
-0.789
|
— | — | — | — | — |
No JSON data available for plots.