Hg_chrom7_TN10mRNA_13995
Organism: Heterodera glycines Gene Locus: chr7:4992441-4995043 Feature type: polypeptideProtein Sequence
Length: 473
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.811 | 0.639 | 1.268 | 0.0 | 3.136 | 1.301 | 0.428 | 1.163 | 0.423 | 0.971 | 1.538 | 1.741 | 0.763 | 0.691 | 2.373 | 0.423 | 0.555 | 0.737 | 0.488 | 0.435 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13205
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.950
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRIR,LGEV,RHRR,SAKKRK,REMKRLK,KRERERREKDEHRHSRK,RREKDEHRHSRKDGKRHRE,KRHRERRDQQLDEFKRELK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.930
|
0.149
|
0.016
|
0.327
|
0.067
|
0.014
|
0.029
|
0.005
|
0.071
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011215
|
1.000
|
1.000
|
Hsc_gene_10609.t1
|
Hsc_gene_10609.t1
|
— |
Q93712.1 Microfibrillar-associated protein 1 [Caenorhabditis elegans]
|
KAI3413807.1 Microfibrillar-associated protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.953|GO:0110165_0.949|GO:0005622_0.730|GO:0043226_0.697|GO:0008150_0.684|GO:0043229_0.681|GO:0016020_0.662|GO:0009987_0.653|GO:0043227_0.618|GO:0005634_0.569|GO:0043231_0.569|GO:0008152_0.540|GO:0043170_0.540|GO:0009058_0.534|GO:0009059_0.534|GO:0010467_0.534|GO:0044237_0.534|GO:0044249_0.534|GO:0006139_0.527|GO:0044238_0.527|GO:0090304_0.526|GO:0034654_0.505
|
IPR009730+217-431+|IPR033194+23-469+
|
— |
PF06991+217-431+Microfibril-associated/Pre-mRNA_processing
|
— |
PTHR15327+23-469+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-358;464-473
|
1.000
|
359-463
|
8qzs_K
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.862
|
56516.940
|
5.180
|
-13.500
|
49.894
|
7.188
|
64.059
|
35.941
|
24.101
|
25.793
|
35.095
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
3044.922
|
5586.367
|
4477.945
|
1912.944
|
1851.716
|
1749.400
|
2697.735
|
2506.625
|
4651.207
|
2039.603
|
3158.862
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.549
|
-1.683
|
-1.118
|
— | — |
0.637
|
0.411
|
— | — | — | — | — | — |
No JSON data available for plots.