Hg_chrom7_TN10mRNA_13998
Organism: Heterodera glycines Gene Locus: chr7:4999127-5001410 Feature type: polypeptideProtein Sequence
Length: 412
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.762 | 0.282 | 0.618 | 0.921 | 0.485 | 0.809 | 0.173 | 1.699 | 1.672 | 1.673 | 0.478 | 1.856 | 1.551 | 1.027 | 1.536 | 1.838 | 0.756 | 1.177 | 1.307 | 1.071 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13208
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRRRSSSSSHPLRRRID
|
— | — | — | — | — | — |
0.000
|
— | — |
0.073
|
0.068
|
0.017
|
0.118
|
0.425
|
0.201
|
0.171
|
0.038
|
0.827
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011218
|
1.000
|
1.000
|
Hsc_gene_10606.t1
|
Hsc_gene_10606.t1
|
— | — |
KAH7713930.1 Protein C09F12.3 [Aphelenchus avenae]
|
No
|
-0.280
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
— |
IPR017452+65-365+|IPR052954+50-392+
|
— | — | — |
PTHR46641+50-392+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-412
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
47204.600
|
9.825
|
25.000
|
20.388
|
14.320
|
42.233
|
57.767
|
14.078
|
6.311
|
45.874
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
midnightblue
|
357.555
|
384.463
|
237.527
|
147.835
|
86.077
|
53.519
|
205.715
|
91.369
|
346.351
|
852.102
|
635.352
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.923
|
-1.516
|
-0.577
|
-0.809
|
-0.673
|
1.953
|
0.662
|
1.315
|
— | — | — | — | — |
No JSON data available for plots.