Hg_chrom7_TN10mRNA_14001
Organism: Heterodera glycines Gene Locus: chr7:5023151-5026399 Feature type: polypeptideProtein Sequence
Length: 439
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.715 | 1.165 | 0.745 | 0.864 | 0.949 | 1.168 | 0.759 | 1.025 | 1.519 | 1.416 | 0.725 | 0.536 | 1.076 | 1.314 | 1.023 | 0.879 | 0.971 | 1.208 | 1.051 | 1.005 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13211
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.968
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
1-32
|
0.956
|
— | — |
0.000
|
— | — |
0.426
|
0.223
|
0.116
|
0.700
|
0.390
|
0.152
|
0.297
|
0.112
|
0.135
|
0.191
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011219
|
1.000
|
1.000
|
Hsc_gene_10602.t1
|
Hsc_gene_10602.t1
|
— |
Q7SXP8.1 Mannose-1-phosphate guanyltransferase alpha-B [Danio rerio]
|
KAH7727664.1 nucleotidyl transferase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009058|GO:0016740
|
GO:0003674_0.755|GO:0008150_0.744|GO:0005575_0.688|GO:0009987_0.680|GO:0110165_0.674|GO:0003824_0.587|GO:0008152_0.577|GO:0044237_0.542|GO:0044238_0.539|GO:0005622_0.510
|
IPR005835+13-223+|IPR011004+251-420+|IPR018357+307-335_313-341+|IPR029044+2-285_12-286+|IPR050486+13-439+
|
— |
PF00483+13-223+Nucleotidyl_transferase
|
— |
PTHR22572+13-439+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-439
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.762
|
48958.350
|
7.341
|
4.500
|
21.640
|
10.706
|
43.280
|
56.720
|
11.845
|
9.795
|
51.025
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
yellow
|
2913.320
|
3386.900
|
2248.215
|
2822.918
|
3496.130
|
4562.083
|
3876.697
|
2401.085
|
2089.227
|
2631.093
|
2398.864
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.821
|
-0.400
|
0.437
|
0.276
|
0.399
|
-0.224
|
-1.028
|
0.833
|
— | — | — | — | — |
No JSON data available for plots.