Hg_chrom7_TN10mRNA_14006
Organism: Heterodera glycines Gene Locus: chr7:5039015-5040091 Feature type: polypeptideProtein Sequence
Length: 188
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.68 | 1.361 | 0.484 | 0.183 | 1.064 | 1.773 | 1.013 | 1.064 | 0.591 | 1.222 | 0.564 | 0.939 | 1.478 | 0.716 | 1.628 | 1.292 | 1.046 | 1.37 | 0.0 | 0.782 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13216
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.141
|
0.933
|
0.045
|
0.148
|
0.014
|
0.048
|
0.046
|
0.006
|
0.052
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011224
|
1.000
|
1.000
|
Hsc_gene_10597.t1
|
Hsc_gene_10597.t1
|
— |
Q95KK4.1 Single-stranded DNA-binding protein, mitochondrial [Oryctolagus cuniculus]
|
KAH7722637.1 MTSS-1 protein [Aphelenchus avenae]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003697|GO:0006260
|
GO:0008150_0.914|GO:0005575_0.908|GO:0110165_0.901|GO:0009987_0.855|GO:0005622_0.829|GO:0005737_0.771|GO:0003674_0.629|GO:0016020_0.614|GO:0065007_0.606|GO:0043226_0.585|GO:0005488_0.577|GO:0008152_0.565|GO:0043229_0.565|GO:0044238_0.544|GO:0043170_0.543|GO:0043227_0.542|GO:0005515_0.541|GO:0043231_0.529|GO:0006139_0.512|GO:0090304_0.503
|
IPR000424+75-154_75-181_78-154+|IPR011344+46-155_73-154+|IPR012340+70-158_74-154+
|
— |
PF00436+75-154+Single-strand_binding_protein_family
|
— |
PTHR10302+46-155+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-188
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.928
|
20879.510
|
9.962
|
7.000
|
22.872
|
10.106
|
51.064
|
48.936
|
13.830
|
9.043
|
51.596
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
4177.525
|
1505.622
|
2430.901
|
6063.409
|
7046.556
|
4170.077
|
3360.169
|
1842.458
|
1660.150
|
7124.362
|
4782.557
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.462
|
1.873
|
1.427
|
0.185
|
-0.741
|
-0.302
|
-1.284
|
1.010
|
-2.205
|
2.005
|
— | — | — |
No JSON data available for plots.