Hg_chrom7_TN10mRNA_14007
Organism: Heterodera glycines Gene Locus: chr7:5040575-5044520 Feature type: polypeptideProtein Sequence
Length: 789
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.84 | 0.973 | 0.622 | 0.656 | 1.056 | 1.3 | 0.694 | 1.204 | 0.958 | 1.182 | 0.749 | 1.342 | 1.232 | 1.584 | 1.164 | 1.086 | 1.164 | 1.229 | 0.39 | 0.485 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13217
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KKKK
|
32-72
|
0.996
|
57-126
|
0.889
|
— | — |
0.000
|
— | — |
0.313
|
0.260
|
0.041
|
0.555
|
0.223
|
0.402
|
0.413
|
0.029
|
0.387
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011225
|
1.000
|
1.000
|
Hsc_gene_10596.t1
|
Hsc_gene_10596.t1
|
— | — |
KAI1722612.1 arrestin domain-containing protein 4 [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR011022+321-507_322-416+|IPR014752+126-291_303-447+|IPR014756+306-371+|IPR050357+131-649+
|
SM01017+321-507+
|
PF02752+322-416+Arrestin_(or_S-antigen),_C-terminal_domain
|
— |
PTHR11188+131-649+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
623-789
|
1.000
|
1-622
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.843
|
86905.560
|
8.331
|
16.500
|
22.814
|
8.999
|
46.768
|
53.232
|
13.054
|
9.759
|
53.612
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
245.863
|
38.053
|
412.019
|
156.877
|
50.312
|
26.254
|
49.678
|
107.320
|
448.570
|
424.031
|
434.548
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.207
|
1.907
|
-1.284
|
-1.670
|
-0.925
|
0.931
|
1.929
|
-0.970
|
— | — | — | — | — |
No JSON data available for plots.