SCN Proteipedia

Hg_chrom7_TN10mRNA_14008

Organism: Heterodera glycines Gene Locus: chr7:5045245-5049941 Feature type: polypeptide

Protein Sequence

Length: 973

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.98	1.195	0.972	0.815	0.942	1.318	0.587	0.874	1.507	1.444	1.012	1.451	1.199	0.81	0.776	1.086	0.842	0.888	0.474	0.907	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13218	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.942

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KRINKELANIRSKFK	—	—	—	—	—	—	0.000	—	—	0.263	0.121	0.006	0.549	0.353	0.408	0.549	0.028	0.374	0.038

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011226	1.000	1.000	Hsc_gene_10595.t1	Hsc_gene_10595.t1	—	Q7QG73.4 AP-2 complex subunit alpha [Anopheles gambiae]	KAI1722611.1 AP-2 complex subunit alpha-2 [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006886\|GO:0015031\|GO:0016192\|GO:0030117\|GO:0030122\|GO:0030131\|GO:0035615\|GO:0072583	GO:0005575_0.927\|GO:0110165_0.924\|GO:0016020_0.852\|GO:0005622_0.839\|GO:0008150_0.789\|GO:0043226_0.774\|GO:0043229_0.761\|GO:0071944_0.760\|GO:0005737_0.755\|GO:0005886_0.747\|GO:0009987_0.743\|GO:0043227_0.724\|GO:0043231_0.703\|GO:0003674_0.593\|GO:0005773_0.563\|GO:0012505_0.549\|GO:0071840_0.533\|GO:0051179_0.531\|GO:0016043_0.530\|GO:0005488_0.520\|GO:0032991_0.519\|GO:0051234_0.517\|GO:0006810_0.507	IPR002553+30-589+\|IPR003164+860-968+\|IPR008152+736-854_743-847+\|IPR009028+860-971+\|IPR011989+3-621+\|IPR012295+861-973+\|IPR013041+732-859+\|IPR016024+8-589+\|IPR017104+3-973+\|IPR050840+15-947+	SM00809+736-854+	PF01602+30-589+Adaptin_N_terminal_region\|PF02296+860-968+Alpha_adaptin_AP2,_C-terminal_domain\|PF02883+743-847+Adaptin_C-terminal_domain	G3DSA:1.25.10.10:FF:000020+3-621+AP-2_complex_subunit_alpha\|G3DSA:3.30.310.10:FF:000004+861-973+AP-2_complex_subunit_alpha	PTHR22780+15-947+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	610-702	2.000	1-609;703-973	6qh7_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.652	108307.580	6.820	3.500	23.227	9.764	46.249	53.751	12.230	10.997	49.024

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	turquoise	1928.999	4821.038	1884.032	1828.951	1718.782	1792.844	2579.670	1805.154	673.840	1772.564	1301.682

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.585	-1.535	—	-0.122	—	0.534	—	0.657	—	—	—	—	—

No JSON data available for plots.

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