Hg_chrom7_TN10mRNA_14010
Organism: Heterodera glycines Gene Locus: chr7:5053268-5055384 Feature type: polypeptideProtein Sequence
Length: 498
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.771 | 0.934 | 0.986 | 1.385 | 1.339 | 0.721 | 0.765 | 1.104 | 1.294 | 1.248 | 0.578 | 1.417 | 1.45 | 0.695 | 1.393 | 1.205 | 0.856 | 0.974 | 0.927 | 0.65 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13220
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.973
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.585
|
0.207
|
0.033
|
0.577
|
0.115
|
0.072
|
0.155
|
0.095
|
0.027
|
0.012
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011228
|
1.000
|
1.000
|
Hsc_gene_10593.t1
|
Hsc_gene_10593.t1
|
— |
Q09454.2 2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 [Caenorhabditis elegans]
|
KAI6197095.1 Diphthamide biosynthesis protein 2 [Aphelenchoides besseyi];KAI6228278.1 Diphthamide biosynthesis protein 2 [Aphelenchoides besseyi]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0017183|GO:0090560
|
GO:0008150_0.889|GO:0005575_0.792|GO:0110165_0.792|GO:0008152_0.719|GO:0044238_0.706|GO:0005622_0.691|GO:0043170_0.685|GO:0019538_0.672|GO:0005737_0.647|GO:0003674_0.558
|
IPR010014+9-488+|IPR016435+7-491_9-490_13-355_35-362+|IPR042263+16-118+|IPR042265+252-355+
|
— |
PF01866+35-362+Putative_diphthamide_synthesis_protein
|
G3DSA:3.40.50.11860:FF:000001+252-355+2-(3-amino-3-carboxypropyl)histidine_synthase_subunit_2
|
PTHR10762+9-490+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
477-498
|
1.000
|
1-476
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
55860.640
|
5.273
|
-8.500
|
26.305
|
10.843
|
46.787
|
53.213
|
12.851
|
13.454
|
50.201
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
steelblue
|
961.062
|
1309.207
|
1357.515
|
1251.523
|
1289.905
|
992.962
|
1173.149
|
1011.622
|
577.464
|
626.842
|
605.680
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.177
|
-0.202
|
— | — |
-0.363
|
0.251
|
— |
0.358
|
— | — | — | — | — |
No JSON data available for plots.