SCN Proteipedia

Hg_chrom7_TN10mRNA_14015

Organism: Heterodera glycines Gene Locus: chr7:5067882-5072664 Feature type: polypeptide

Protein Sequence

Length: 629

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.85	1.627	0.954	0.877	0.927	1.264	0.397	1.59	0.989	1.203	1.108	1.122	1.237	0.52	1.168	1.772	0.808	0.795	0.489	0.655	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13224	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_Clustered	0.538

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	SKKKKKKNNKKKKN,RRFKMVMICLRKRKSA,KKNDPLSVHNEEVAKKESK,KKGVEDEREDDSFGEKNKR	—	—	—	—	—	—	0.000	—	—	0.334	0.244	0.007	0.696	0.283	0.175	0.329	0.028	0.203	0.130

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001402	2.000	3.000	Hsc_gene_10587.t1;Hsc_gene_10587.t2;Hsc_gene_10587.t3	Hsc_gene_10587.t1;Hsc_gene_10587.t2;Hsc_gene_10587.t3	—	—	KAI1723304.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]	No	-0.120

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.965\|GO:0009987_0.927\|GO:0065007_0.905\|GO:0050789_0.900\|GO:0050794_0.884\|GO:0003674_0.839\|GO:0005488_0.821\|GO:0050896_0.820\|GO:0008152_0.815\|GO:0043170_0.815\|GO:0032502_0.814\|GO:0048856_0.814\|GO:0071840_0.814\|GO:0016043_0.812\|GO:0032501_0.807\|GO:0009058_0.795\|GO:0009059_0.795\|GO:0044237_0.795\|GO:0044249_0.795\|GO:0019222_0.794\|GO:0048518_0.793\|GO:0031323_0.790\|GO:0044238_0.789\|GO:0010467_0.785\|GO:0060255_0.785\|GO:0048522_0.783\|GO:0080090_0.776\|GO:0006139_0.774\|GO:0007275_0.774\|GO:0048519_0.772\|GO:0005515_0.771\|GO:0090304_0.769\|GO:0034654_0.765\|GO:0141187_0.765\|GO:0048523_0.764\|GO:0009889_0.763\|GO:0010468_0.762\|GO:0010556_0.762\|GO:0031326_0.762\|GO:0030154_0.758\|GO:0048869_0.758\|GO:0016070_0.757\|GO:0048731_0.756\|GO:0032774_0.750\|GO:0009893_0.749\|GO:0048468_0.739\|GO:0010604_0.738\|GO:0031325_0.738\|GO:0019219_0.736\|GO:0006950_0.733\|GO:0006351_0.729\|GO:0051252_0.728\|GO:0009891_0.727\|GO:0031328_0.724\|GO:0010557_0.721\|GO:2001141_0.719\|GO:0006355_0.718\|GO:0048513_0.717\|GO:0009653_0.714\|GO:0009892_0.713\|GO:0051239_0.713\|GO:0006366_0.710\|GO:0045935_0.708\|GO:0006357_0.707\|GO:0031324_0.706\|GO:0051254_0.706\|GO:0010605_0.703\|GO:0009890_0.698\|GO:0010558_0.698\|GO:0031327_0.698\|GO:0045893_0.698\|GO:1902680_0.698\|GO:0009605_0.697\|GO:0044419_0.694\|GO:0008219_0.692\|GO:0012501_0.692\|GO:0002376_0.691\|GO:0010628_0.691\|GO:0009607_0.690\|GO:0043067_0.690\|GO:0051240_0.690\|GO:0006915_0.689\|GO:0048646_0.689\|GO:0042981_0.688\|GO:0043207_0.688\|GO:0051707_0.688\|GO:0010629_0.686\|GO:0043069_0.686\|GO:0045944_0.686\|GO:0043066_0.685\|GO:0006952_0.684\|GO:0098542_0.683\|GO:0030097_0.682\|GO:0051241_0.682\|GO:0006955_0.681\|GO:0001775_0.680\|GO:0045321_0.679\|GO:0140546_0.679\|GO:0009617_0.678\|GO:0045229_0.678\|GO:0046649_0.678\|GO:0002521_0.677\|GO:1903131_0.677\|GO:0001816_0.676\|GO:0001817_0.676\|GO:0001819_0.674\|GO:0002252_0.674\|GO:0002520_0.674\|GO:0030098_0.674\|GO:0030217_0.674\|GO:0042110_0.674\|GO:0042113_0.674\|GO:0042742_0.674\|GO:0140110_0.672\|GO:0001562_0.670\|GO:0001818_0.670\|GO:0002250_0.670\|GO:0002263_0.670\|GO:0002266_0.670\|GO:0002268_0.670\|GO:0002285_0.670\|GO:0002286_0.670\|GO:0002287_0.670\|GO:0002292_0.670\|GO:0002293_0.670\|GO:0002294_0.670\|GO:0002312_0.670\|GO:0002313_0.670\|GO:0002315_0.670\|GO:0002335_0.670\|GO:0002366_0.670\|GO:0002443_0.670\|GO:0002449_0.670\|GO:0002455_0.670\|GO:0002460_0.670\|GO:0002467_0.670\|GO:0006959_0.670\|GO:0016064_0.670\|GO:0019724_0.670\|GO:0019730_0.670\|GO:0030183_0.670\|GO:0030198_0.670\|GO:0032609_0.670\|GO:0032613_0.670\|GO:0032640_0.670\|GO:0032649_0.670\|GO:0032653_0.670\|GO:0032680_0.670\|GO:0032720_0.670\|GO:0032729_0.670\|GO:0032733_0.670\|GO:0035710_0.670\|GO:0042088_0.670\|GO:0042092_0.670\|GO:0042093_0.670\|GO:0042832_0.670\|GO:0043062_0.670\|GO:0043367_0.670\|GO:0045064_0.670\|GO:0046631_0.670\|GO:0046632_0.670\|GO:0048534_0.670\|GO:0048536_0.670\|GO:0070227_0.670\|GO:0070228_0.670\|GO:0070229_0.670\|GO:0070231_0.670\|GO:0070232_0.670\|GO:0070233_0.670\|GO:0071706_0.670\|GO:0071887_0.670\|GO:1903555_0.670\|GO:1903556_0.670\|GO:2000106_0.670\|GO:2000107_0.670\|GO:0030674_0.667\|GO:0060090_0.667\|GO:0003712_0.660\|GO:0003713_0.657\|GO:0005575_0.399\|GO:0110165_0.398\|GO:0005622_0.364	IPR002110+314-382_320-352_354-383_354-386+\|IPR036770+139-398_274-385+	SM00248+320-352_354-383+	PF12796+314-382+Ankyrin_repeats_(3_copies)	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-177;626-629	1.000	178-625	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.887	70785.800	8.924	24.000	27.027	10.493	56.280	43.720	16.216	10.811	50.715

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	yellow	1683.555	2083.869	1413.176	1363.512	1829.109	1925.045	2129.759	1252.791	1956.372	1399.302	1638.046

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.789	-0.749	—	0.392	—	0.156	-0.725	0.908	—	—	—	—	—

No JSON data available for plots.

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