Hg_chrom7_TN10mRNA_14016
Organism: Heterodera glycines Gene Locus: chr7:5086472-5090884 Feature type: polypeptideProtein Sequence
Length: 816
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.784 | 1.995 | 0.847 | 0.634 | 0.694 | 2.388 | 0.657 | 1.164 | 0.681 | 1.043 | 0.836 | 1.514 | 0.613 | 1.438 | 0.675 | 1.453 | 1.205 | 0.557 | 0.754 | 0.829 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13225
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KKRP,KRRP,RKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.499
|
0.235
|
0.015
|
0.657
|
0.146
|
0.102
|
0.070
|
0.064
|
0.150
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011230
|
1.000
|
1.000
|
Hsc_gene_10584.t1
|
Hsc_gene_10584.t1;Hsc_gene_10585.t1
|
— | — |
KAH7716855.1 Protein F53H2.3 c [Aphelenchus avenae]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-194;253-353;467-730;805-816
|
3.000
|
195-252;354-466;731-804
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.921
|
89917.740
|
7.473
|
9.500
|
19.975
|
8.333
|
55.392
|
44.608
|
11.152
|
8.824
|
56.005
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
3789.916
|
5835.181
|
2646.006
|
3051.639
|
2441.573
|
3187.494
|
4165.207
|
7747.541
|
2984.035
|
3439.863
|
3244.508
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.369
|
-1.072
|
0.313
|
-0.353
|
0.399
|
0.395
|
1.189
|
-0.760
|
— | — | — | — | — |
No JSON data available for plots.