Hg_chrom7_TN10mRNA_14017
Organism: Heterodera glycines Gene Locus: chr7:5091687-5095244 Feature type: polypeptideProtein Sequence
Length: 565
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.297 | 0.864 | 0.611 | 1.038 | 1.121 | 0.953 | 0.527 | 1.858 | 0.747 | 1.818 | 0.429 | 2.29 | 1.77 | 0.681 | 1.806 | 0.834 | 0.58 | 0.858 | 0.817 | 0.521 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13226
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
KRQQAVRQLMQKVASLRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.519
|
0.452
|
0.034
|
0.492
|
0.089
|
0.511
|
0.231
|
0.039
|
0.384
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011231
|
1.000
|
1.000
|
Hsc_gene_10583.t1
|
Hsc_gene_10583.t1
|
— |
Q28DB0.1 Tetratricopeptide repeat protein 39B [Xenopus tropicalis]
|
KAH7701943.1 Protein C32D5.6 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.667|GO:0110165_0.658|GO:0008150_0.642|GO:0005622_0.580|GO:0043226_0.520
|
IPR011990+269-494+|IPR019412+3-559_12-477+
|
— |
PF10300+12-477+Iml2/Tetratricopeptide_repeat_protein_39
|
— |
PTHR31859+3-559+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-565
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.640
|
64289.790
|
8.453
|
19.500
|
25.487
|
12.920
|
42.301
|
57.699
|
15.398
|
10.088
|
44.248
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
453.007
|
1112.578
|
518.125
|
228.999
|
122.128
|
133.808
|
147.563
|
441.606
|
52.066
|
928.553
|
552.916
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.333
|
-2.417
|
-1.069
|
-0.938
|
— | — |
1.621
|
-1.441
|
-4.261
|
— |
-2.515
|
— | — |
No JSON data available for plots.