Hg_chrom7_TN10mRNA_14020
Organism: Heterodera glycines Gene Locus: chr7:5104246-5108140 Feature type: polypeptideProtein Sequence
Length: 800
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.076 | 1.192 | 0.523 | 0.819 | 0.667 | 1.923 | 0.997 | 2.938 | 0.694 | 0.811 | 0.398 | 0.882 | 0.903 | 1.466 | 0.995 | 1.857 | 1.393 | 0.511 | 0.192 | 0.147 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13228
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
DERKRHTKVHAKQKGGGRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.875
|
0.106
|
0.010
|
0.445
|
0.062
|
0.061
|
0.035
|
0.015
|
0.101
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011232
|
1.000
|
1.000
|
Hsc_gene_10581.t1
|
Hsc_gene_10581.t1
|
— |
P43300.2 Early growth response protein 3 [Mus musculus]
|
KAI3413910.1 Early growth response protein 3 [Globodera pallida]
|
No
|
-1.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.961|GO:0009987_0.860|GO:0065007_0.836|GO:0050789_0.834|GO:0050794_0.831|GO:0005575_0.756|GO:0110165_0.755|GO:0008152_0.740|GO:0019222_0.740|GO:0031323_0.740|GO:0044237_0.740|GO:0044238_0.738|GO:0080090_0.738|GO:0003674_0.735|GO:0005488_0.735|GO:0006139_0.734|GO:0016070_0.734|GO:0019219_0.734|GO:0043170_0.734|GO:0051252_0.734|GO:0060255_0.734|GO:0090304_0.734|GO:0009058_0.732|GO:0009059_0.732|GO:0032774_0.732|GO:0034654_0.732|GO:0044249_0.732|GO:0141187_0.732|GO:0009889_0.728|GO:0010467_0.728|GO:0010468_0.728|GO:0010556_0.728|GO:0031326_0.728|GO:0003676_0.726|GO:0043226_0.726|GO:0097159_0.726|GO:0005622_0.724|GO:0005634_0.724|GO:0016020_0.724|GO:0043227_0.724|GO:0043229_0.724|GO:0043231_0.724|GO:2001141_0.724|GO:0006351_0.720|GO:0006355_0.720|GO:0003677_0.709|GO:0043565_0.709|GO:0003690_0.665|GO:1990837_0.665|GO:0001067_0.632|GO:0006357_0.632|GO:0006366_0.632|GO:0000976_0.625|GO:0032501_0.617|GO:0048518_0.615|GO:0048522_0.614|GO:0032502_0.594|GO:0048856_0.594|GO:0140110_0.572|GO:0009893_0.560|GO:0009891_0.558|GO:0045935_0.558|GO:0000977_0.555|GO:0010604_0.555|GO:0031325_0.555|GO:0051254_0.555|GO:0010557_0.554|GO:0031328_0.554|GO:0003700_0.546|GO:0045893_0.538|GO:1902680_0.538|GO:0007275_0.526|GO:0045944_0.505|GO:0048731_0.502
|
IPR013087+688-712_688-717_690-712_718-740_718-745_720-740_746-768_746-773_747-768+|IPR036236+673-727_712-764+
|
SM00355+688-712_718-740_746-768+
|
PF00096+688-712_718-740_746-768+Zinc_finger,_C2H2_type
|
G3DSA:3.30.160.60:FF:000092+681-773+Early_growth_response_protein_3
|
PTHR23235+247-773+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-707;743-800
|
1.000
|
708-742
|
1aay_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.962
|
84652.040
|
8.089
|
28.500
|
20.250
|
9.875
|
54.375
|
45.625
|
13.375
|
6.875
|
60.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1635.947
|
3130.699
|
2837.064
|
1526.913
|
550.923
|
608.065
|
837.786
|
2182.907
|
1946.214
|
1319.725
|
1588.220
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.372
|
-1.173
|
-0.785
|
-1.501
|
— |
0.472
|
1.742
|
-1.241
|
— | — | — | — | — |
No JSON data available for plots.