Hg_chrom7_TN10mRNA_14022
Organism: Heterodera glycines Gene Locus: chr7:5116973-5120750 Feature type: polypeptideProtein Sequence
Length: 578
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.785 | 0.805 | 0.598 | 0.895 | 1.038 | 0.887 | 0.721 | 1.125 | 0.538 | 1.122 | 0.55 | 0.916 | 1.538 | 1.963 | 1.836 | 1.705 | 0.737 | 0.97 | 0.932 | 0.356 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13230
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RPRR,RRRLPFHRLPLPFRRSDR
|
— | — |
7-35
|
1.000
|
— | — |
0.000
|
— | — |
0.314
|
0.154
|
0.026
|
0.654
|
0.160
|
0.210
|
0.157
|
0.044
|
0.464
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011233
|
1.000
|
1.000
|
Hsc_gene_10579.t1
|
Hsc_gene_10578.t2;Hsc_gene_10579.t1
|
— | — |
KAI3413909.1 hypothetical protein GPALN_011383 [Globodera pallida]
|
No
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR001478+28-97_42-113_43-97_57-97+|IPR036034+8-114_27-119+
|
SM00228+42-113+
|
PF00595+57-97+PDZ_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4;168-214;438-578
|
2.000
|
5-167;215-437
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.974
|
63996.670
|
9.616
|
24.500
|
24.394
|
10.208
|
47.751
|
52.249
|
14.879
|
9.516
|
55.190
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
338.908
|
89.317
|
56.802
|
130.683
|
107.577
|
85.213
|
184.146
|
81.326
|
16.586
|
1194.634
|
689.756
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.886
|
0.412
|
1.313
|
-0.315
|
— |
1.120
|
— |
1.319
|
— | — | — | — | — |
No JSON data available for plots.