SCN Proteipedia

Hg_chrom7_TN10mRNA_14023

Organism: Heterodera glycines Gene Locus: chr7:5124427-5130432 Feature type: polypeptide

Protein Sequence

Length: 1,031

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.466	0.767	0.741	0.803	0.97	1.442	0.843	1.164	0.668	0.8	0.764	0.799	0.835	1.231	1.306	1.69	0.827	0.97	0.298	0.599	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13231	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.866

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	KRRIGRQIRHGQQQKQPKR,RRRAHSRSPNRRVGLRRRARR	—	—	18-38	0.950	—	—	0.015	—	—	0.272	0.171	0.061	0.639	0.106	0.153	0.167	0.062	0.619	0.109

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004575	2.000	1.000	Hsc_gene_10578.t1	Hsc_gene_10578.t1;Hsc_gene_10578.t2	—	Q18563.4 Regulator of G-protein signaling rgs-6 [Caenorhabditis elegans]	KAF7632159.1 RGS domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005096	GO:0008150_0.954\|GO:0009987_0.880\|GO:0005575_0.874\|GO:0110165_0.874\|GO:0065007_0.851\|GO:0050789_0.840\|GO:0050794_0.820\|GO:0050896_0.776\|GO:0003674_0.769\|GO:0005488_0.732\|GO:0005622_0.725\|GO:0051716_0.714\|GO:0016020_0.707\|GO:0007154_0.687\|GO:0023052_0.684\|GO:0005515_0.671\|GO:0007165_0.669\|GO:0007186_0.623\|GO:0071944_0.576\|GO:0005737_0.542\|GO:0005886_0.530\|GO:0098772_0.510\|GO:0030234_0.508	IPR016137+209-230_212-325_212-330_213-324_231-249_262-285_306-325+\|IPR029071+625-689+\|IPR036305+208-324+\|IPR044926+199-327+\|IPR046995+42-736+	SM00315+212-330+	PF00615+213-324+Regulator_of_G_protein_signaling_domain	—	PTHR45945+42-736+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-1;45-220;704-902;966-1031	3.000	2-44;221-703;903-965	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.919	109869.800	8.655	28.000	23.666	7.759	49.467	50.533	13.773	9.893	59.069

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1608.367	3018.678	3254.293	2345.843	1652.861	1307.416	1354.422	1988.544	692.413	921.526	823.335

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.120	-0.501	-0.364	-0.537	-0.322	—	0.503	-0.414	—	—	—	—	—

No JSON data available for plots.

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