Hg_chrom7_TN10mRNA_14025
Organism: Heterodera glycines Gene Locus: chr7:5133898-5142729 Feature type: polypeptideProtein Sequence
Length: 2,147
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.845 | 1.376 | 0.813 | 0.128 | 2.709 | 1.815 | 0.488 | 0.675 | 0.776 | 1.271 | 1.164 | 1.644 | 0.44 | 0.331 | 2.253 | 0.732 | 0.962 | 0.395 | 0.43 | 0.384 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13232
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRGEKRSRSR,KKVTDLWNELQRVRRQ,RKTQEKLAECQKAIRK,RKELEERVDKMKKRLE,KKRLEEYEESFREQKK,KRHLKRAEEVEKELKR,RRTSSASSDLQFYRGQKR,RRENGEMLRQLEEAERSRK,RRLKQELEKAISEGKRKAH,KREMENEMTKWEEQRRKSE
|
— | — |
56-80
|
1.000
|
— | — |
0.000
|
— | — |
0.218
|
0.093
|
0.315
|
0.581
|
0.079
|
0.048
|
0.138
|
0.120
|
0.215
|
0.200
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002419
|
1.000
|
3.000
|
Hsc_gene_10577.t1;Hsc_gene_10577.t2;Hsc_gene_10577.t3
|
Hsc_gene_10577.t1;Hsc_gene_10577.t2;Hsc_gene_10577.t3
|
— |
O61308.1 227 kDa spindle- and centromere-associated protein [Parascaris univalens]
|
KAK5965026.1 Major antigen [Trichostrongylus colubriformis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
PF15035+208-393+Ciliary_rootlet_component,_centrosome_cohesion
|
— |
PTHR23159+200-1250+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
65-246;377-1474;1532-2147
|
3.000
|
1-64;247-376;1475-1531
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.642
|
251657.890
|
5.477
|
-28.500
|
40.801
|
4.797
|
64.788
|
35.212
|
20.075
|
20.727
|
37.448
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2744.531
|
6574.332
|
4549.867
|
1626.298
|
821.745
|
1474.810
|
648.762
|
2082.444
|
4246.749
|
2155.415
|
3051.701
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.761
|
-2.152
|
-1.375
|
-1.016
|
0.858
|
-1.174
|
0.390
|
-1.537
|
— | — | — | — | — |
No JSON data available for plots.