Hg_chrom7_TN10mRNA_14028
Organism: Heterodera glycines Gene Locus: chr7:5153757-5156134 Feature type: polypeptideProtein Sequence
Length: 334
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.94 | 1.184 | 0.544 | 0.31 | 0.599 | 0.768 | 1.069 | 1.497 | 1.065 | 0.688 | 0.318 | 1.937 | 1.331 | 1.382 | 1.833 | 1.326 | 0.589 | 0.726 | 1.382 | 2.554 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13235
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_10574
|
— | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
mitochondria
|
KRAR,KRIHPNQFDKERFKRA
|
4-31
|
0.960
|
— | — |
1-22
|
0.985
|
1.000
|
0.000
|
0.000
|
0.196
|
0.149
|
0.029
|
0.213
|
0.085
|
0.134
|
0.137
|
0.026
|
0.218
|
0.903
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011235
|
1.000
|
1.000
|
Hsc_gene_10574.t1
|
Hsc_gene_10574.t1
|
— | — |
KAF7632164.1 SCP domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR014044+157-318_167-276+|IPR035940+154-315_154-330+
|
SM00198+157-318+
|
PF00188+167-276+Cysteine-rich_secretory_protein_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-334
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.943
|
38044.910
|
9.846
|
20.000
|
20.659
|
18.263
|
41.617
|
58.383
|
14.072
|
6.587
|
50.898
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
purple
|
368.548
|
6.516
|
25.218
|
2660.597
|
901.945
|
137.798
|
101.710
|
60.168
|
0.000
|
152.165
|
86.951
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.721
|
8.539
|
6.830
|
-1.593
|
-2.695
|
-0.431
|
-1.306
|
0.898
|
— |
12.235
|
4.559
|
— | — |