Hg_chrom7_TN10mRNA_14033
Organism: Heterodera glycines Gene Locus: chr7:5173164-5180441 Feature type: polypeptideProtein Sequence
Length: 893
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.432 | 1.25 | 0.428 | 0.463 | 0.672 | 3.675 | 0.507 | 0.952 | 0.771 | 1.074 | 0.764 | 1.779 | 0.622 | 0.818 | 0.891 | 1.552 | 0.955 | 0.831 | 0.172 | 0.395 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13240
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKLKRKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.901
|
0.066
|
0.005
|
0.305
|
0.078
|
0.020
|
0.047
|
0.060
|
0.070
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002420
|
1.000
|
3.000
|
Hsc_gene_10568.t1;Hsc_gene_10568.t2;Hsc_gene_24267.t1
|
Hsc_gene_10568.t1;Hsc_gene_10568.t2
|
— |
G5ED89.2 Transcription factor dcp-66 [Caenorhabditis elegans]
|
KAF7637020.1 P66_CC domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0000122
|
GO:0008150_0.973|GO:0009987_0.944|GO:0005575_0.852|GO:0110165_0.852|GO:0005622_0.798|GO:0016020_0.798|GO:0043226_0.768|GO:0043229_0.741|GO:0016043_0.711|GO:0071840_0.711|GO:0043227_0.687|GO:0043231_0.668|GO:0065007_0.668|GO:0050789_0.663|GO:0050794_0.658|GO:0003674_0.591|GO:0005488_0.591|GO:0043228_0.591|GO:0043232_0.591|GO:0032991_0.586|GO:0005634_0.580|GO:0008152_0.557|GO:0019222_0.557|GO:0006325_0.550|GO:0031323_0.546|GO:0044237_0.546|GO:0043170_0.533|GO:0060255_0.533|GO:0044238_0.532|GO:0080090_0.532|GO:0009058_0.511|GO:0009889_0.511|GO:0031326_0.511|GO:0044249_0.511|GO:0009059_0.510|GO:0010556_0.510|GO:0010467_0.504|GO:0010468_0.504
|
IPR040386+60-617+
|
— | — | — |
PTHR13455+60-617+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-274;473-741
|
2.000
|
275-472;742-893
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.900
|
96986.110
|
10.129
|
35.500
|
17.693
|
5.711
|
54.087
|
45.913
|
11.310
|
6.383
|
52.072
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
2627.235
|
4572.460
|
3097.390
|
1944.360
|
1922.128
|
2091.139
|
3233.871
|
2325.042
|
3051.887
|
2010.341
|
2456.718
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.791
|
-1.371
|
-0.563
|
— | — |
0.639
|
— |
0.617
|
— | — | — | — | — |
No JSON data available for plots.