Hg_chrom7_TN10mRNA_14034
Organism: Heterodera glycines Gene Locus: chr7:5189467-5192157 Feature type: polypeptideProtein Sequence
Length: 564
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.804 | 1.526 | 0.935 | 0.428 | 1.123 | 0.909 | 0.675 | 1.152 | 1.497 | 1.342 | 0.967 | 0.939 | 1.379 | 0.852 | 1.194 | 1.266 | 0.93 | 0.779 | 0.818 | 0.365 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13241
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.941
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
RRMKRLR
|
21-41
|
0.980
|
— | — | — | — |
0.220
|
— | — |
0.127
|
0.034
|
0.079
|
0.182
|
0.242
|
0.708
|
0.580
|
0.188
|
0.696
|
0.347
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011238
|
1.000
|
1.000
|
Hsc_gene_10567.t1
|
Hsc_gene_10567.t1
|
— |
Q06HQ7.1 Phospholipase B1, membrane-associated [Monodelphis domestica]
|
KAI1731080.1 phospholipase B1, membrane-associated [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004620|GO:0016788
|
GO:0008150_0.955|GO:0009987_0.727|GO:0005575_0.670|GO:0110165_0.669|GO:0016020_0.607|GO:0008152_0.581|GO:0044238_0.578|GO:0044237_0.566|GO:0065007_0.520|GO:0071944_0.517|GO:0006793_0.513|GO:0006796_0.513|GO:0019637_0.503|GO:0006629_0.502
|
IPR001087+188-420+|IPR038885+64-438+
|
— |
PF00657+188-420+GDSL-like_Lipase/Acylhydrolase
|
— |
PTHR21325+64-438+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
63-161;558-564
|
2.000
|
1-62;162-557
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.811
|
63007.630
|
7.967
|
8.500
|
26.418
|
9.574
|
51.064
|
48.936
|
14.539
|
11.879
|
49.645
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
paleturquoise
|
788.018
|
616.776
|
943.869
|
762.097
|
728.941
|
942.634
|
1282.317
|
1028.850
|
975.627
|
351.302
|
618.870
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.385
|
0.168
|
-0.200
|
— |
0.386
|
0.454
|
— |
0.461
|
— | — | — | — | — |
No JSON data available for plots.