Hg_chrom7_TN10mRNA_14036
Organism: Heterodera glycines Gene Locus: chr7:5193461-5194514 Feature type: polypeptideProtein Sequence
Length: 227
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.024 | 1.127 | 0.721 | 0.304 | 1.395 | 1.017 | 0.682 | 0.661 | 0.979 | 1.488 | 1.001 | 1.555 | 1.591 | 0.169 | 1.349 | 1.636 | 0.867 | 0.934 | 0.0 | 0.389 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13243
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
37-58
|
0.998
|
24-57
|
0.998
|
— | — |
0.000
|
— | — |
0.370
|
0.259
|
0.012
|
0.632
|
0.046
|
0.098
|
0.169
|
0.073
|
0.158
|
0.170
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011240
|
1.000
|
1.000
|
Hsc_gene_10565.t1
|
Hsc_gene_10565.t1
|
— |
Q7T364.1 Tumor necrosis factor, alpha-induced protein 8-like protein 2 B [Danio rerio]
|
KHN80371.1 Tumor necrosis factor alpha-induced protein 8 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042981
|
GO:0008150_0.848|GO:0005575_0.781|GO:0110165_0.775|GO:0005622_0.744|GO:0009987_0.710|GO:0005737_0.668|GO:0065007_0.572|GO:0050789_0.553|GO:0050794_0.536|GO:0016020_0.516|GO:0050896_0.511
|
IPR008477+22-208_33-209+|IPR038355+19-211+
|
— |
PF05527+33-209+Domain_of_unknown_function_(DUF758)
|
— |
PTHR12757+22-208+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
208-227
|
1.000
|
1-207
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.768
|
25171.640
|
8.484
|
3.500
|
26.872
|
8.370
|
52.423
|
47.577
|
14.537
|
12.335
|
48.018
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
448.717
|
155.847
|
151.785
|
312.809
|
787.699
|
920.302
|
1073.793
|
332.907
|
20.732
|
546.911
|
321.406
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.269
|
0.869
|
1.153
|
1.301
|
0.240
|
0.233
|
-1.584
|
1.837
|
— | — | — | — | — |
No JSON data available for plots.