Hg_chrom7_TN10mRNA_14037
Organism: Heterodera glycines Gene Locus: chr7:5195290-5197932 Feature type: polypeptideProtein Sequence
Length: 552
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.864 | 0.716 | 1.021 | 0.937 | 1.057 | 0.79 | 1.1 | 1.359 | 0.845 | 1.151 | 0.329 | 1.066 | 1.761 | 1.463 | 1.664 | 1.165 | 0.683 | 0.988 | 0.418 | 0.586 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13244
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.769
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — |
0.901
|
0.350
|
1.000
|
— |
0.144
|
0.018
|
0.043
|
0.261
|
0.235
|
0.588
|
0.488
|
0.163
|
0.823
|
0.156
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011241
|
1.000
|
1.000
|
Hsc_gene_10564.t1
|
Hsc_gene_10564.t1
|
— |
Q21540.2 Cuticlin-6 [Caenorhabditis elegans]
|
KAI1722344.1 zona pellucida-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.919|GO:0110165_0.916|GO:0071944_0.817|GO:0030312_0.590|GO:0031012_0.558|GO:0062023_0.558|GO:0060102_0.540
|
IPR001507+45-296_45-300_87-287+|IPR051962+34-536+
|
SM00241+45-300+
|
PF00100+87-287+Zona_pellucida-like_domain
|
— |
PTHR22907+34-536+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
293-487
|
2.000
|
1-292;488-552
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.778
|
60620.530
|
6.341
|
-1.500
|
25.000
|
11.594
|
43.478
|
56.522
|
13.043
|
11.957
|
54.529
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
75.583
|
51.106
|
111.207
|
50.795
|
32.839
|
195.935
|
82.795
|
127.530
|
47.412
|
50.539
|
49.199
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.886
|
— |
-1.018
|
-0.663
|
2.594
|
-1.232
|
-0.735
|
— | — | — | — | — | — |