Hg_chrom7_TN10mRNA_14038
Organism: Heterodera glycines Gene Locus: chr7:5198312-5201945 Feature type: polypeptideProtein Sequence
Length: 754
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.756 | 1.234 | 0.748 | 0.64 | 1.216 | 1.632 | 0.521 | 1.592 | 0.973 | 1.738 | 0.583 | 1.482 | 0.774 | 0.689 | 1.326 | 1.478 | 0.804 | 1.025 | 0.816 | 0.429 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13245
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|lysosome_vacuole
|
— |
KREWLEQMEEAKRRQQ,RRQQEERALVRQATIRARR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.204
|
0.145
|
0.012
|
0.605
|
0.134
|
0.609
|
0.408
|
0.027
|
0.271
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011242
|
1.000
|
1.000
|
Hsc_gene_10563.t1
|
Hsc_gene_10563.t1
|
— |
Q5U247.1 Exocyst complex component 8 [Xenopus laevis]
|
KAI1731077.1 vps51/Vps67 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000145|GO:0006887
|
GO:0005575_0.917|GO:0110165_0.917|GO:0071944_0.727|GO:0005622_0.674|GO:0016020_0.653|GO:0005737_0.571|GO:0005886_0.540|GO:0008150_0.501
|
IPR011993+154-277+|IPR016159+348-560+|IPR032403+352-544+|IPR033961+17-679+|IPR042560+460-558+|IPR042561+343-454+
|
— |
PF08700+18-104+Vps51/EXO84/COG1_N-terminal|PF16528+352-544+Exocyst_component_84_C-terminal
|
— |
PTHR21426+17-679+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;259-361
|
2.000
|
2-258;362-754
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.674
|
84662.310
|
6.779
|
4.000
|
24.934
|
8.488
|
51.857
|
48.143
|
13.528
|
11.406
|
47.745
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
1607.813
|
1487.444
|
1052.149
|
1137.134
|
1032.764
|
992.002
|
1763.613
|
1074.412
|
1059.352
|
3037.350
|
2189.637
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.729
|
-0.524
|
0.221
|
-0.170
|
— |
0.841
|
— |
0.859
|
— | — | — | — | — |
No JSON data available for plots.