SCN Proteipedia

Hg_chrom7_TN10mRNA_14039

Organism: Heterodera glycines Gene Locus: chr7:5202097-5206003 Feature type: polypeptide

Protein Sequence

Length: 746

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.888	0.686	0.707	0.555	0.603	0.722	0.862	2.48	1.728	1.83	0.447	1.419	2.011	0.516	0.793	1.36	0.813	1.056	1.34	0.473	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13246	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_Clustered	0.394

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	lysosome_vacuole\|golgi_apparatus	—	—	74-95	0.989	—	—	—	—	0.000	—	—	0.173	0.072	0.011	0.115	0.331	0.670	0.672	0.075	0.398	0.015

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011243	1.000	1.000	Hsc_gene_10562.t1	Hsc_gene_10562.t1	—	Q28CE7.1 Proton-coupled zinc antiporter SLC30A5 [Xenopus tropicalis]	KAI1731116.1 cation efflux family domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005385\|GO:0006812\|GO:0006829\|GO:0006882\|GO:0008324\|GO:0016020\|GO:0055085	GO:0008150_0.873\|GO:0005575_0.768\|GO:0110165_0.764\|GO:0016020_0.734\|GO:0071944_0.707\|GO:0005886_0.702\|GO:0009987_0.689\|GO:0051179_0.679\|GO:0006810_0.675\|GO:0051234_0.675\|GO:0005622_0.609\|GO:0003674_0.597\|GO:0055085_0.584\|GO:0043226_0.583\|GO:0005737_0.580\|GO:0006811_0.559\|GO:0043227_0.549\|GO:0043229_0.549\|GO:0005773_0.547\|GO:0043231_0.547\|GO:0006812_0.532\|GO:0034220_0.527\|GO:0030001_0.524\|GO:0098660_0.511	IPR002524+399-702_402-620+\|IPR027469+398-619_398-621+\|IPR045316+56-702+	—	PF01545+402-620+Cation_efflux_family	G3DSA:1.20.1510.10:FF:000035+397-619+Zinc_transporter_5	PTHR45755+56-702+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	709-746	1.000	1-708	8j80_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.658	82537.080	7.219	13.500	19.303	15.550	39.544	60.456	11.796	7.507	47.453

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey60	2817.862	4521.056	2430.279	3258.691	3768.952	4360.270	3334.664	3411.047	1439.763	1841.464	1669.306

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.125	-0.610	0.531	0.178	0.225	-0.378	-0.459	—	—	—	—	—	—

No JSON data available for plots.

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