Hg_chrom7_TN10mRNA_14041
Organism: Heterodera glycines Gene Locus: chr7:5207512-5208430 Feature type: polypeptideProtein Sequence
Length: 240
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.775 | 1.938 | 1.061 | 0.575 | 1.597 | 0.962 | 0.298 | 1.25 | 1.204 | 0.957 | 1.136 | 0.735 | 1.736 | 0.481 | 1.531 | 0.595 | 1.161 | 0.568 | 0.962 | 1.593 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13248
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.553
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRLAYIPLNKWHVTVAKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.810
|
0.185
|
0.011
|
0.479
|
0.059
|
0.043
|
0.032
|
0.002
|
0.103
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
KAI1722351.1 sin3 binding region of histone deacetylase complex subunit SAP30 domain-containing protein [Ditylenchus destructor]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.934|GO:0009987_0.738|GO:0065007_0.690|GO:0005575_0.685|GO:0110165_0.681|GO:0050789_0.678|GO:0050794_0.659|GO:0005622_0.657|GO:0043226_0.601|GO:0016020_0.582|GO:0043229_0.581|GO:0008152_0.559|GO:0044238_0.550|GO:0043227_0.539|GO:0043231_0.536|GO:0043170_0.532|GO:0044237_0.532|GO:0009058_0.523|GO:0044249_0.509|GO:0009059_0.507|GO:0006139_0.502
|
IPR024145+122-230+|IPR025718+170-221+|IPR038291+148-237+
|
— |
PF13867+170-221+Sin3_binding_region_of_histone_deacetylase_complex_subunit_SAP30
|
— |
PTHR13286+122-230+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
238-240
|
1.000
|
1-237
|
2ld7_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.499
|
28608.050
|
7.032
|
2.000
|
32.917
|
15.417
|
56.250
|
43.750
|
17.500
|
15.417
|
42.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
1773.717
|
1485.556
|
1283.203
|
1632.052
|
1918.249
|
2022.872
|
1103.388
|
1601.555
|
1763.732
|
2294.632
|
2067.103
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.439
|
— |
0.454
|
0.201
|
— |
-0.868
|
-0.439
|
-0.400
|
— | — | — | — | — |
No JSON data available for plots.