Hg_chrom7_TN10mRNA_14042
Organism: Heterodera glycines Gene Locus: chr7:5208721-5210465 Feature type: polypeptideProtein Sequence
Length: 148
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.707 | 0.943 | 0.369 | 0.699 | 1.126 | 1.213 | 0.804 | 1.689 | 1.201 | 1.187 | 1.638 | 3.18 | 0.938 | 0.91 | 1.931 | 0.483 | 0.443 | 1.024 | 0.0 | 0.994 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13249
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.943
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKKR,RKHKSLLVRLRKAKL,RQRRKMNRGLNRKHKSLLVRLRK
|
42-64
|
0.991
|
— | — | — | — |
0.000
|
— | — |
0.574
|
0.189
|
0.142
|
0.517
|
0.241
|
0.053
|
0.086
|
0.021
|
0.062
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011245
|
1.000
|
1.000
|
Hsc_gene_10560.t1
|
Hsc_gene_10560.t1
|
— |
Q56K10.3 Small ribosomal subunit protein uS19 [Bos taurus]
|
KAI3409985.1 ribosomal protein S15 [Globodera pallida]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003735|GO:0005840|GO:0006412|GO:0015935
|
GO:0005575_0.878|GO:0110165_0.878|GO:0005622_0.844|GO:0043226_0.810|GO:0043229_0.796|GO:0005737_0.681|GO:0043228_0.631|GO:0003674_0.629|GO:0043232_0.629|GO:0016020_0.568|GO:0032991_0.524|GO:0043227_0.512|GO:0005829_0.505
|
IPR002222+1-148_7-143_44-137_46-131_81-100_101-113_113-128+|IPR005713+15-148+|IPR020934+101-125+|IPR023575+4-148_51-132+
|
— |
PF00203+46-131+Ribosomal_protein_S19
|
G3DSA:3.30.860.10:FF:000002+5-148+40S_ribosomal_protein_S15
|
PTHR11880+7-143+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-148
|
8oo0_SP
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
17167.340
|
10.850
|
19.500
|
32.432
|
10.135
|
47.297
|
52.703
|
23.649
|
8.784
|
38.514
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
7492.543
|
2225.547
|
3721.089
|
7626.078
|
8248.345
|
7262.636
|
3710.375
|
2227.858
|
14257.432
|
8953.578
|
11226.658
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.513
|
1.640
|
1.143
|
— | — |
-0.959
|
-1.813
|
0.880
|
— | — | — | — | — |
No JSON data available for plots.