Hg_chrom7_TN10mRNA_14047
Organism: Heterodera glycines Gene Locus: chr7:5270246-5271539 Feature type: polypeptideProtein Sequence
Length: 280
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.54 | 1.163 | 0.844 | 1.601 | 1.19 | 0.824 | 0.638 | 0.893 | 1.667 | 1.014 | 0.812 | 1.681 | 1.19 | 0.755 | 1.676 | 1.327 | 0.937 | 0.812 | 2.473 | 0.105 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13254
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
RRRR,KRRWEATKELEEMCREERR,RRWEATKELEEMCREERRR
|
— | — | — | — | — | — |
0.447
|
— | — |
0.118
|
0.166
|
0.049
|
0.170
|
0.180
|
0.115
|
0.337
|
0.034
|
0.661
|
0.600
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004577
|
2.000
|
1.000
|
Hsc_gene_19672.t1
|
— | — | — |
CAD5220727.1 unnamed protein product [Bursaphelenchus xylophilus];CAG9107043.1 unnamed protein product [Bursaphelenchus xylophilus]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.913|GO:0110165_0.913|GO:0016020_0.829|GO:0005622_0.815|GO:0043226_0.785|GO:0043229_0.768|GO:0071944_0.738|GO:0043227_0.736|GO:0005886_0.726|GO:0005737_0.715|GO:0043231_0.715|GO:0005773_0.612|GO:0012505_0.605|GO:0005794_0.557
|
IPR042235+79-248+|IPR051962+82-240+
|
— | — | — |
PTHR22907+82-240+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-280
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.830
|
32012.780
|
8.183
|
7.500
|
27.143
|
9.643
|
50.357
|
49.643
|
15.357
|
11.786
|
48.571
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
72.252
|
164.015
|
156.181
|
78.625
|
39.879
|
27.790
|
20.407
|
103.894
|
0.000
|
94.558
|
54.033
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.301
|
-1.198
|
-0.881
|
-1.014
|
-0.505
|
— |
1.803
|
-2.207
|
-7.312
|
7.154
|
— | — | — |
No JSON data available for plots.