Hg_chrom7_TN10mRNA_14051
Organism: Heterodera glycines Gene Locus: chr7:5288426-5290795 Feature type: polypeptideProtein Sequence
Length: 422
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.689 | 1.047 | 1.077 | 0.735 | 1.461 | 0.243 | 0.592 | 0.948 | 1.159 | 1.345 | 1.221 | 1.255 | 1.316 | 1.23 | 1.064 | 0.88 | 0.505 | 1.041 | 2.37 | 1.185 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13258
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.875
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
nucleus
|
KRTDPGDLAERLKLKEK
|
— | — | — | — |
1-21
|
0.999
|
1.000
|
0.000
|
0.000
|
0.118
|
0.162
|
0.036
|
0.339
|
0.885
|
0.215
|
0.401
|
0.007
|
0.181
|
0.193
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011249
|
1.000
|
1.000
|
Hsc_gene_19669.t1
|
Hsc_gene_19669.t1
|
— |
O45293.1 Probable N-acetylgalactosaminyltransferase 8 [Caenorhabditis elegans]
|
KAF7632803.1 Glyco_trans_2-like domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.869|GO:0003674_0.755|GO:0009987_0.748|GO:0003824_0.685|GO:0008152_0.663|GO:0044238_0.637|GO:0009058_0.620|GO:0005575_0.590|GO:0110165_0.590|GO:0016740_0.581|GO:0044237_0.578|GO:0140096_0.554|GO:0043170_0.545|GO:0044249_0.545|GO:0019538_0.543|GO:0016757_0.536|GO:0016758_0.534|GO:0008194_0.526|GO:1901135_0.524|GO:0009059_0.523|GO:0004653_0.521|GO:0008376_0.521|GO:0043412_0.511|GO:0016020_0.504|GO:0036211_0.504|GO:1901137_0.501
|
IPR001173+110-301+|IPR029044+38-420_93-412+|IPR045885+110-411+
|
— |
PF00535+110-301+Glycosyl_transferase_family_2
|
— |
PTHR11675+59-415+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-422
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.593
|
48784.110
|
6.133
|
-2.000
|
29.858
|
13.744
|
44.550
|
55.450
|
15.166
|
14.692
|
45.972
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
4771.822
|
1707.492
|
1498.363
|
6118.218
|
11324.272
|
23362.868
|
3189.382
|
2312.369
|
93.719
|
2239.069
|
1319.633
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.416
|
1.705
|
2.138
|
0.856
|
1.060
|
-2.863
|
-3.450
|
0.609
|
-4.712
|
6.216
|
— | — | — |