SCN Proteipedia

Hg_chrom7_TN10mRNA_14054

Organism: Heterodera glycines Gene Locus: chr7:5298027-5299849 Feature type: polypeptide

Protein Sequence

Length: 433

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.994	1.558	0.714	0.557	1.078	1.777	1.347	1.155	0.872	0.843	0.84	2.445	0.898	0.666	0.896	1.089	1.022	0.595	0.711	0.747	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13261	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.576

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	nucleus	—	KKKR,KKRRPHGK	—	—	—	—	—	—	0.000	—	—	0.836	0.139	0.007	0.325	0.105	0.063	0.069	0.025	0.050	0.028

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011251	1.000	1.000	Hsc_gene_19667.t1	Hsc_gene_19667.t1	—	P41935.1 Homeobox protein ceh-10 [Caenorhabditis elegans]	CDJ84176.1 Homeobox domain containing protein [Haemonchus contortus];CDJ86345.1 Homeobox domain containing protein [Haemonchus contortus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.916\|GO:0009987_0.835\|GO:0032501_0.737\|GO:0032502_0.713\|GO:0048856_0.713\|GO:0007275_0.644\|GO:0065007_0.643\|GO:0048731_0.636\|GO:0050789_0.635\|GO:0003674_0.623\|GO:0050794_0.614\|GO:0005575_0.611\|GO:0005488_0.600\|GO:0097159_0.596\|GO:0110165_0.594\|GO:0003676_0.584\|GO:0043226_0.554\|GO:0005622_0.552\|GO:0043229_0.550\|GO:0008152_0.549\|GO:0009058_0.549\|GO:0009059_0.549\|GO:0043170_0.549\|GO:0044237_0.549\|GO:0044249_0.549\|GO:0010467_0.548\|GO:0044238_0.548\|GO:0006139_0.532\|GO:0019222_0.531\|GO:0031323_0.531\|GO:0016070_0.527\|GO:0090304_0.527\|GO:0030154_0.526\|GO:0048869_0.526\|GO:0080090_0.524\|GO:0034654_0.521\|GO:0009889_0.516\|GO:0031326_0.516\|GO:0048513_0.516\|GO:0060255_0.516\|GO:0032774_0.514\|GO:0141187_0.514\|GO:0010556_0.511	IPR001356+213-273_215-277_216-272_216-274+\|IPR009057+211-275+\|IPR017970+248-271+\|IPR023339+275-330+\|IPR052294+38-338+	SM00389+215-277+	PF00046+216-272+Homeodomain	G3DSA:1.10.10.60:FF:000679+217-276+Homeobox_protein_aristaless	PTHR46892+38-338+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-20;170-232;298-433	2.000	21-169;233-297	3a01_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.857	46991.430	6.997	3.000	22.633	9.007	50.115	49.885	12.240	10.393	53.349

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	64.778	188.516	228.474	106.090	45.667	30.470	40.774	88.885	13.432	0.000	5.757

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.967	-0.998	-1.249	-0.569	—	1.446	-0.984	—	—	—	—	—

No JSON data available for plots.

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