Hg_chrom7_TN10mRNA_14056
Organism: Heterodera glycines Gene Locus: chr7:5303239-5304445 Feature type: polypeptideProtein Sequence
Length: 218
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.8 | 1.067 | 1.001 | 0.791 | 0.765 | 0.706 | 0.382 | 1.376 | 1.019 | 1.488 | 1.182 | 1.349 | 1.656 | 0.97 | 1.03 | 1.769 | 0.752 | 0.695 | 0.706 | 0.944 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13263
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.719
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
PRRPKGSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.451
|
0.093
|
0.056
|
0.517
|
0.440
|
0.519
|
0.454
|
0.069
|
0.131
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011253
|
1.000
|
1.000
|
Hsc_gene_19664.t1
|
Hsc_gene_19664.t1
|
— |
Q9JME7.1 Trafficking protein particle complex subunit 2-like protein [Mus musculus]
|
KAI1721461.1 putative cytosolic Fe-S cluster assembly factor oxy-4 [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006888
|
GO:0005575_0.927|GO:0110165_0.927|GO:0005622_0.888|GO:0016020_0.860|GO:0043226_0.838|GO:0043229_0.838|GO:0043227_0.805|GO:0043231_0.802|GO:0005737_0.797|GO:0005829_0.611
|
IPR006722+3-136_27-136+|IPR011012+3-138+|IPR044760+3-137+
|
— |
PF04628+27-136+Sedlin,_N-terminal_conserved_region
|
— |
PTHR12403+3-136+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
199-218
|
1.000
|
1-198
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.901
|
24654.270
|
9.117
|
9.000
|
25.688
|
12.844
|
50.000
|
50.000
|
15.596
|
10.092
|
49.083
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
757.136
|
796.466
|
924.770
|
689.303
|
611.274
|
557.201
|
834.803
|
1008.394
|
287.497
|
1063.521
|
730.939
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.346
|
-0.315
|
-0.205
|
— |
0.593
|
0.750
|
— | — | — | — | — | — |
No JSON data available for plots.