Hg_chrom7_TN10mRNA_14057
Organism: Heterodera glycines Gene Locus: chr7:5308238-5331176 Feature type: polypeptideProtein Sequence
Length: 4,506
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.859 | 0.588 | 0.896 | 0.429 | 1.228 | 1.263 | 0.867 | 1.32 | 0.819 | 1.089 | 0.461 | 0.601 | 0.635 | 1.558 | 1.626 | 1.065 | 1.117 | 1.116 | 1.878 | 1.018 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13264
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RHRR,KKRRQRYVNGRERER
|
6-33
|
0.992
|
— | — | — | — |
0.001
|
— | — |
0.212
|
0.032
|
0.015
|
0.345
|
0.176
|
0.152
|
0.171
|
0.007
|
0.830
|
0.150
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001403
|
1.000
|
4.000
|
Hsc_gene_19663.t1;Hsc_gene_19663.t2;Hsc_gene_19663.t3;Hsc_gene_19663.t4
|
Hsc_gene_19641.t1;Hsc_gene_19663.t1;Hsc_gene_19663.t2;Hsc_gene_19663.t3;Hsc_gene_19663.t4
|
— |
Q64487.3 Receptor-type tyrosine-protein phosphatase delta [Mus musculus]
|
KAI1729096.1 fibronectin type III domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.902|GO:0005575_0.833|GO:0110165_0.830|GO:0009987_0.828|GO:0032501_0.729|GO:0003674_0.696|GO:0032502_0.666|GO:0048856_0.651|GO:0007275_0.631|GO:0071944_0.621|GO:0005886_0.611|GO:0016020_0.611|GO:0048731_0.593|GO:0016043_0.586|GO:0071840_0.586|GO:0065007_0.564|GO:0007399_0.549|GO:0050789_0.545
|
IPR003961+56-149_68-148_172-252_173-249_173-263_174-266_268-363_485-564_487-574_487-577_491-570_835-917_837-932_969-1054_971-1071_975-1047_1071-1151_1073-1161_1073-1164_1169-1258_1172-1272_1186-1252_1277-1357_1278-1364_1278-1367_1279-1370_1372-1460_1372-1469_1374-1465_1374-1475_1474-1560_1477-1568_1477-1570_1477-1573_1716-1796_1718-1811_1720-1789_1812-1901_1814-1917_1816-1911_1916-1998_1918-2008_1919-2011_2013-2100_2013-2106_2015-2102_2015-2119_2118-2203_2121-2209_2121-2213_2121-2216_2219-2312_2219-2322_2221-2319_2221-2325_2327-2410_2327-2419_2329-2412_2329-2422_2424-2528_2425-2513_2425-2523_2433-2509_2529-2611_2531-2617_2531-2621_2531-2624_2626-2712_2626-2720_2628-2718_2628-2723_2726-2808_2727-2818_2728-2816_2728-2821_2823-2915_2825-2924_2825-2930_2827-2926_2932-3022_2934-3034_2938-3031_2941-3017_3036-3228_3039-3137_3248-3331_3249-3341_3250-3339_3250-3345_3346-3444_3347-3454_3348-3442_3348-3457_3458-3543_3462-3556_3466-3553_3468-3545_3564-3655_3567-3670_3571-3655_3571-3656_3667-3754_3673-3758_3673-3759+|IPR013783+173-277_485-579_969-1065_1068-1166_1182-1270_1271-1364_1365-1464_1465-1574_1715-1811_1812-1908_1909-2010_2011-2109_2110-2215_2216-2321_2322-2418_2419-2519_2520-2622_2623-2722_2723-2816_2817-2933_2934-3028_3029-3234_3235-3341_3342-3451_3463-3558_3569-3661_3672-3756+|IPR036116+69-255_487-577_974-1163_1186-1372_1371-1573_1583-1789_1720-1802_1818-2013_2012-2215_2218-2411_2424-2626_2625-2761_2727-2928_2937-3107_3151-3343_3288-3455_3466-3656_3673-3854+|IPR050713+1719-2123+
|
SM00060+56-149_172-252_268-363_485-564_835-917_969-1054_1071-1151_1169-1258_1277-1357_1372-1460_1474-1560_1716-1796_1812-1901_1916-1998_2013-2106_2118-2203_2219-2312_2327-2410_2425-2513_2529-2611_2626-2712_2726-2808_2823-2915_2932-3022_3036-3228_3248-3331_3346-3444_3458-3543_3564-3655_3667-3754+
|
PF00041+173-249_491-570_1278-1364_1374-1465_1477-1568_2015-2102_2121-2209_2221-2319_2329-2412_2433-2509_2531-2617_2628-2718_2728-2816_2825-2924_2941-3017_3250-3339_3348-3442_3468-3545_3571-3655_3673-3758+Fibronectin_type_III_domain
|
G3DSA:2.60.40.10:FF:000028+1470-1572_2721-2821+Neuronal_cell_adhesion_molecule|G3DSA:2.60.40.10:FF:001900+2216-2324+Myotactin_form_B
|
PTHR46957+1719-2123+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;1078-1164;1340-1389;1445-1504;1672-1718;1844-2028;2574-2742;3010-3143;3193-3267;4168-4506
|
9.000
|
3-1077;1165-1339;1390-1444;1505-1671;1719-1843;2029-2573;2743-3009;3144-3192;3268-4167
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
503647.310
|
6.536
|
1.500
|
25.943
|
10.830
|
47.670
|
52.330
|
13.648
|
12.295
|
53.107
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
brown
|
6151.680
|
14430.589
|
17843.556
|
2990.407
|
1976.561
|
14482.388
|
2783.406
|
11166.187
|
1411.549
|
1227.527
|
1306.394
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-2.408
|
-2.470
|
-0.629
|
2.888
|
-2.369
|
-0.483
|
-1.861
|
— | — | — | — | — |
No JSON data available for plots.