Hg_chrom7_TN10mRNA_14058
Organism: Heterodera glycines Gene Locus: chr7:5332195-5335230 Feature type: polypeptideProtein Sequence
Length: 473
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.762 | 0.934 | 1.153 | 0.365 | 1.374 | 0.867 | 0.956 | 2.22 | 1.034 | 1.314 | 0.833 | 2.612 | 1.586 | 0.691 | 1.338 | 0.876 | 0.659 | 0.48 | 1.626 | 0.684 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13265
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.960
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RRRR
|
— | — | — | — |
1-19
|
0.794
|
0.777
|
0.000
|
0.000
|
0.334
|
0.269
|
0.029
|
0.209
|
0.301
|
0.062
|
0.198
|
0.022
|
0.113
|
0.812
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011254
|
1.000
|
1.000
|
Hsc_gene_19662.t1
|
Hsc_gene_19662.t1
|
— |
O44836.2 Matrix metalloproteinase-B [Caenorhabditis elegans]
|
KAI1721464.1 matrixin domain-containing protein [Ditylenchus destructor]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270|GO:0031012
|
GO:0008150_0.817|GO:0005575_0.728|GO:0110165_0.728|GO:0009987_0.702|GO:0003674_0.667|GO:0008152_0.547
|
IPR001818+145-316+|IPR006026+134-318+|IPR021190+112-125_169-184_201-229_269-294+|IPR024079+53-321+|IPR033739+145-316+|IPR036365+59-122+
|
SM00235+134-318+
|
PF00413+145-316+Matrixin
|
— |
PTHR10201+42-336+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-473
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.497
|
54330.610
|
6.390
|
-1.500
|
31.078
|
14.588
|
48.626
|
51.374
|
16.490
|
14.588
|
42.918
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
302.682
|
158.350
|
191.564
|
521.763
|
798.993
|
497.368
|
824.474
|
297.868
|
0.000
|
90.339
|
51.622
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.583
|
1.555
|
0.582
|
-0.667
|
0.738
|
-0.843
|
1.610
|
-7.283
|
9.884
|
— | — | — |