Hg_chrom7_TN10mRNA_14060
Organism: Heterodera glycines Gene Locus: chr7:5341456-5344749 Feature type: polypeptideProtein Sequence
Length: 539
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.626 | 1.079 | 1.012 | 1.152 | 1.051 | 1.427 | 0.42 | 1.113 | 1.031 | 1.504 | 0.928 | 0.873 | 1.752 | 1.391 | 0.719 | 1.511 | 0.426 | 1.04 | 0.714 | 0.6 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13267
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.810
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
LGEV,KKNSNEQQQICAKSKRL
|
— | — |
54-76
|
1.000
|
— | — |
0.000
|
— | — |
0.426
|
0.359
|
0.047
|
0.666
|
0.307
|
0.355
|
0.359
|
0.071
|
0.449
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011256
|
1.000
|
1.000
|
Hsc_gene_19658.t1
|
Hsc_gene_19658.t1
|
— |
Q6GM16.1 Nucleoredoxin [Xenopus laevis]
|
KAF7632809.1 Thioredoxin domain-containing protein [Meloidogyne graminicola];KAF7632810.1 Thioredoxin domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.952|GO:0009987_0.902|GO:0065007_0.874|GO:0050789_0.855|GO:0050794_0.841|GO:0050896_0.821|GO:0005575_0.701|GO:0110165_0.701|GO:0051716_0.655|GO:0005622_0.652|GO:0016020_0.620|GO:0007154_0.619|GO:0023052_0.616|GO:0007165_0.604|GO:0043226_0.581|GO:0043229_0.579|GO:0007166_0.563|GO:0043227_0.560|GO:0043231_0.542|GO:0016055_0.534|GO:0032501_0.519|GO:0032502_0.505|GO:0048856_0.505
|
IPR012336+235-322+|IPR013766+203-361+|IPR036249+211-322+
|
— |
PF13905+235-322+Thioredoxin-like
|
— |
PTHR46472+99-491+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
536-539
|
1.000
|
1-535
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.679
|
60634.370
|
5.641
|
-6.000
|
23.748
|
11.503
|
47.124
|
52.876
|
11.874
|
11.874
|
49.722
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
789.765
|
561.096
|
814.649
|
961.115
|
1141.351
|
1007.547
|
1110.807
|
994.216
|
586.302
|
543.953
|
562.102
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.309
|
0.639
|
0.347
|
0.216
|
— | — | — |
0.302
|
— | — | — | — | — |
No JSON data available for plots.