Hg_chrom7_TN10mRNA_14061
Organism: Heterodera glycines Gene Locus: chr7:5344765-5347322 Feature type: polypeptideProtein Sequence
Length: 388
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.629 | 1.738 | 0.984 | 0.267 | 1.074 | 1.586 | 0.552 | 2.448 | 0.859 | 1.01 | 0.664 | 1.516 | 1.503 | 1.388 | 1.157 | 1.252 | 0.761 | 0.703 | 0.793 | 0.91 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13268
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.831
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — |
53-75
|
0.999
|
— | — |
0.002
|
— | — |
0.373
|
0.122
|
0.011
|
0.783
|
0.121
|
0.215
|
0.235
|
0.091
|
0.204
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011257
|
1.000
|
1.000
|
Hsc_gene_19657.t1
|
Hsc_gene_19657.t1;Hsc_gene_19657.t2
|
— |
Q9VCR6.2 Scaffold protein salvador [Drosophila melanogaster]
|
KAI1704585.1 scaffold protein salvador [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006915|GO:0035329|GO:0042127|GO:0060090
|
GO:0005575_0.838|GO:0110165_0.838|GO:0008150_0.718|GO:0003674_0.682|GO:0005622_0.671|GO:0009987_0.671|GO:0050789_0.642|GO:0065007_0.642|GO:0050794_0.627|GO:0005488_0.591|GO:0050896_0.518|GO:0005737_0.512
|
IPR001202+197-231_198-231_199-229_200-229_233-266_234-266_236-264_239-264+|IPR030030+30-385+|IPR036020+196-234_235-266+
|
SM00456+198-231_234-266+
|
PF00397+199-229+WW_domain
|
— |
PTHR47522+30-385+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-161;380-388
|
1.000
|
162-379
|
7bqf_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.769
|
44465.500
|
6.723
|
2.500
|
26.804
|
14.433
|
53.866
|
46.134
|
14.948
|
11.856
|
48.969
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
1139.623
|
1053.477
|
863.425
|
694.814
|
703.818
|
868.959
|
1443.418
|
1174.538
|
371.992
|
2155.937
|
1391.389
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.517
|
-0.738
|
-0.204
|
— |
0.318
|
0.741
|
0.329
|
0.439
|
-2.646
|
— | — | — | — |
No JSON data available for plots.