Hg_chrom7_TN10mRNA_14062
Organism: Heterodera glycines Gene Locus: chr7:5347357-5348805 Feature type: polypeptideProtein Sequence
Length: 226
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.669 | 1.132 | 0.724 | 0.153 | 2.507 | 1.021 | 0.263 | 1.327 | 1.18 | 0.837 | 1.542 | 1.822 | 0.123 | 0.255 | 3.161 | 1.707 | 0.363 | 0.536 | 0.34 | 0.26 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13269
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.934
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKLNDERLEMLESKRRYE,RSHRSNRKRSRERSSEKRQKASRSSHKDRRRDRSRSSSR
|
43-67
|
0.925
|
— | — | — | — |
0.000
|
— | — |
0.964
|
0.064
|
0.005
|
0.151
|
0.019
|
0.038
|
0.097
|
0.022
|
0.031
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011258
|
1.000
|
1.000
|
Hsc_gene_19656.t1
|
Hsc_gene_19656.t1;Hsc_gene_19656.t2;Hsc_gene_19656.t3
|
— |
P34433.1 Uncharacterized protein F44E2.3 [Caenorhabditis elegans]
|
KAI1704586.1 arginine and glutamate-rich 1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR033371+88-223_91-225+
|
— |
PF15346+88-223+Arginine_and_glutamate-rich_1
|
— |
PTHR31711+91-225+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-226
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.587
|
26863.180
|
10.745
|
18.000
|
47.345
|
4.425
|
70.354
|
29.646
|
28.319
|
19.027
|
36.283
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
1590.721
|
1760.063
|
1384.000
|
1197.154
|
1214.028
|
1430.476
|
1218.039
|
2024.717
|
1369.093
|
2096.905
|
1784.986
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.576
|
-0.693
|
— | — |
0.252
|
-0.221
|
0.393
|
-0.588
|
— | — | — | — | — |
No JSON data available for plots.