Hg_chrom7_TN10mRNA_14063
Organism: Heterodera glycines Gene Locus: chr7:5349398-5351543 Feature type: polypeptideProtein Sequence
Length: 436
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.12 | 1.28 | 1.251 | 0.316 | 0.994 | 1.117 | 1.065 | 1.032 | 1.427 | 1.116 | 1.286 | 1.349 | 0.956 | 0.573 | 0.702 | 0.721 | 0.752 | 1.077 | 0.706 | 0.809 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13270
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.429
|
0.447
|
0.079
|
0.835
|
0.152
|
0.204
|
0.145
|
0.167
|
0.152
|
0.146
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011259
|
1.000
|
1.000
|
Hsc_gene_19655.t1
|
Hsc_gene_19655.t1
|
— |
Q27527.3 Enolase [Caenorhabditis elegans]
|
KAI3413836.1 Enolase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000015|GO:0000287|GO:0004634|GO:0006096
|
GO:0005575_0.764|GO:0110165_0.751|GO:0008150_0.731|GO:0003674_0.692|GO:0005622_0.664|GO:0005737_0.645|GO:0003824_0.620|GO:0009987_0.517
|
IPR000941+1-433_3-420_4-433_5-420_5-431_7-419_37-51_109-125_166-179_320-331_343-357_372-389+|IPR020809+343-356+|IPR020810+144-434_145-433+|IPR020811+5-136+|IPR029017+3-129_5-141+|IPR036849+130-436_144-433+
|
SM01192+144-434+|SM01193+5-136+
|
PF00113+145-433+Enolase,_C-terminal_TIM_barrel_domain|PF03952+5-136+Enolase,_N-terminal_domain
|
G3DSA:3.20.20.120:FF:000002+130-436+Enolase_1|G3DSA:3.30.390.10:FF:000001+1-129+Enolase
|
PTHR11902+4-433+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
436-436
|
1.000
|
1-435
|
3b97_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.645
|
47681.260
|
6.593
|
0.500
|
26.835
|
9.174
|
46.330
|
53.670
|
13.991
|
12.844
|
51.606
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
10568.236
|
3503.865
|
5893.264
|
12092.504
|
26389.940
|
18291.086
|
12716.322
|
7499.206
|
7698.371
|
8067.434
|
7909.264
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.521
|
1.650
|
1.145
|
1.094
|
-0.514
|
-0.513
|
-1.393
|
0.906
|
— | — |
1.835
|
— | — |
No JSON data available for plots.