Hg_chrom7_TN10mRNA_14064
Organism: Heterodera glycines Gene Locus: chr7:5351699-5353153 Feature type: polypeptideProtein Sequence
Length: 290
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.521 | 1.764 | 0.627 | 2.021 | 0.575 | 1.149 | 0.862 | 1.724 | 1.073 | 1.445 | 0.575 | 0.203 | 2.682 | 0.729 | 1.056 | 0.837 | 0.735 | 0.627 | 2.387 | 1.217 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13271
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.569
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.035
|
0.136
|
0.012
|
0.157
|
0.720
|
0.303
|
0.562
|
0.004
|
0.365
|
0.203
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011260
|
1.000
|
1.000
|
Hsc_gene_19654.t1
|
Hsc_gene_19654.t1
|
— |
Q6UX98.1 Probable palmitoyltransferase ZDHHC24 [Homo sapiens]
|
KAI6173941.1 Lethal (2) 35Be [Aphelenchoides besseyi]
|
No
|
-0.600
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016409
|
GO:0008150_0.850|GO:0005575_0.839|GO:0110165_0.839|GO:0016020_0.777|GO:0009987_0.739|GO:0071944_0.710|GO:0005886_0.706|GO:0005622_0.673|GO:0003674_0.633|GO:0043226_0.624|GO:0005737_0.613|GO:0043229_0.600|GO:0043227_0.594|GO:0043231_0.577|GO:0005773_0.531|GO:0065007_0.508
|
IPR001594+142-214+
|
— |
PF01529+142-214+DHHC_palmitoyltransferase
|
— |
PTHR22883+112-232+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-290
|
8hf3_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.862
|
33666.560
|
8.149
|
11.000
|
19.310
|
20.345
|
41.724
|
58.276
|
12.414
|
6.897
|
46.897
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
530.071
|
607.211
|
473.305
|
552.154
|
691.872
|
595.947
|
464.096
|
573.077
|
327.865
|
589.039
|
477.107
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.588
|
-0.274
|
0.330
|
0.294
|
-0.201
|
-0.352
|
— | — | — | — | — | — | — |
No JSON data available for plots.