Hg_chrom7_TN10mRNA_14065
Organism: Heterodera glycines Gene Locus: chr7:5353731-5357334 Feature type: polypeptideProtein Sequence
Length: 656
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.833 | 1.595 | 1.025 | 1.104 | 0.838 | 1.016 | 0.563 | 0.838 | 1.389 | 1.195 | 0.624 | 1.076 | 1.44 | 0.674 | 1.244 | 1.568 | 1.15 | 0.647 | 0.352 | 0.942 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13272
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
KPRK,KRSR,RRKR,PKRRK
|
— | — | — | — | — | — |
0.458
|
— | — |
0.247
|
0.423
|
0.036
|
0.420
|
0.431
|
0.282
|
0.299
|
0.172
|
0.305
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002421
|
1.000
|
3.000
|
Hsc_gene_19653.t1;Hsc_gene_19653.t2;Hsc_gene_19653.t3
|
Hsc_gene_19653.t1;Hsc_gene_19653.t2
|
— |
Q11186.2 Patanin-like phospholipase domain-containing protein atgl-1 [Caenorhabditis elegans]
|
KAI1696898.1 patatin-like phospholipase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629|GO:0016042|GO:0016787
|
GO:0005575_0.881|GO:0110165_0.879|GO:0005622_0.773|GO:0008150_0.763|GO:0009987_0.716|GO:0003674_0.709|GO:0043226_0.609|GO:0043229_0.595|GO:0003824_0.552|GO:0008152_0.536|GO:0044238_0.536|GO:0044237_0.521|GO:0016020_0.511
|
IPR002641+13-176_13-180+|IPR016035+12-243+|IPR033562+9-241+
|
— |
PF01734+13-176+Patatin-like_phospholipase
|
— |
PTHR12406+9-241+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
479-656
|
1.000
|
1-478
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.784
|
73191.450
|
6.827
|
2.500
|
22.561
|
10.518
|
51.372
|
48.628
|
11.890
|
10.671
|
53.354
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
2120.627
|
1477.310
|
1574.870
|
1195.014
|
1233.519
|
1351.879
|
2934.676
|
3185.436
|
1778.308
|
3086.749
|
2525.989
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.443
|
-0.291
|
— | — |
1.127
|
1.132
|
— | — | — | — | — | — |
No JSON data available for plots.