Hg_chrom7_TN10mRNA_14067
Organism: Heterodera glycines Gene Locus: chr7:5360146-5361227 Feature type: polypeptideProtein Sequence
Length: 259
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.718 | 0.808 | 0.351 | 0.533 | 1.03 | 1.188 | 0.781 | 1.351 | 0.772 | 0.939 | 1.989 | 1.59 | 0.858 | 0.891 | 1.812 | 0.441 | 1.519 | 1.287 | 1.188 | 0.454 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13274
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.600
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRKEK,RRSCTTRRDMRRKVQ,RRDMRRKVQMRKLIK,RRKVQMRKLIKQHEEKKQK,RKVQMRKLIKQHEEKKQKG,RKPAKFERFIRPMGLRFKK
|
43-63
|
0.855
|
— | — | — | — |
0.000
|
— | — |
0.355
|
0.252
|
0.046
|
0.720
|
0.254
|
0.011
|
0.117
|
0.002
|
0.015
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011262
|
1.000
|
1.000
|
Hsc_gene_19651.t1
|
— | — |
Q3SX11.1 Ribosome biogenesis protein NSA2 homolog [Bos taurus]
|
KAI3409966.1 Ribosome biogenesis protein [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.730|GO:0110165_0.719|GO:0008150_0.680|GO:0005622_0.667|GO:0016020_0.662|GO:0043226_0.645|GO:0009987_0.638|GO:0043229_0.631|GO:0043227_0.589|GO:0043231_0.576
|
IPR022309+66-258+|IPR039411+1-258+
|
— |
PF01201+66-258+Ribosomal_protein_S8e
|
G3DSA:2.40.10.310:FF:000001+176-259+NSA2,_ribosome_biogenesis_homolog
|
PTHR12642+1-258+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-118
|
1.000
|
119-259
|
2mvf_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.910
|
29671.810
|
11.303
|
39.500
|
32.819
|
8.880
|
53.282
|
46.718
|
24.710
|
8.108
|
45.174
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
2926.560
|
1091.695
|
1764.203
|
2578.803
|
2468.915
|
2017.432
|
2916.051
|
1258.823
|
3893.288
|
4597.762
|
4295.845
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.462
|
1.103
|
0.657
|
-0.095
|
-0.277
|
0.543
|
-0.788
|
1.357
|
— | — | — | — | — |
No JSON data available for plots.