Hg_chrom7_TN10mRNA_14073
Organism: Heterodera glycines Gene Locus: chr7:5371331-5377881 Feature type: polypeptideProtein Sequence
Length: 1,311
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.665 | 1.082 | 0.999 | 0.526 | 1.195 | 1.291 | 0.518 | 1.373 | 1.119 | 0.979 | 1.329 | 1.301 | 0.975 | 0.865 | 1.152 | 1.765 | 1.013 | 0.786 | 0.293 | 0.673 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13279
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.747
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RPRR,KRVTQEARWRKVLRK,EKEHKKRSRQEKKRKM,RKDDSVDLVKKKKKKAEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.957
|
0.044
|
0.010
|
0.210
|
0.037
|
0.022
|
0.033
|
0.011
|
0.048
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004579
|
1.000
|
2.000
|
Hsc_gene_19647.t1;Hsc_gene_19647.t2
|
Hsc_gene_19647.t1;Hsc_gene_19647.t2
|
— |
A0A0K3AXH1.1 AT-rich interactive domain-containing protein arid-1 [Caenorhabditis elegans]
|
KAI1713307.1 beta-trefoil DNA-binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
GO:0008150_0.853|GO:0009987_0.823|GO:0008152_0.658|GO:0043170_0.658|GO:0044238_0.639|GO:0005575_0.628|GO:0110165_0.621|GO:0065007_0.618|GO:0050789_0.612|GO:0005622_0.598|GO:0050794_0.592|GO:0016020_0.561|GO:0043226_0.561|GO:0043229_0.541|GO:0019222_0.509
|
IPR001606+407-498_408-499_411-494+|IPR016197+717-824+|IPR036431+390-506_407-503+|IPR051232+10-1304+
|
SM00501+408-499+|SM01014+404-494+
|
PF01388+411-494+ARID/BRIGHT_DNA_binding_domain
|
— |
PTHR13964+10-1304+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
124-262;515-704;862-1079;1126-1311
|
4.000
|
1-123;263-514;705-861;1080-1125
|
7dm4_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.878
|
147125.630
|
9.159
|
41.000
|
29.825
|
8.924
|
58.047
|
41.953
|
17.162
|
12.662
|
49.962
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkturquoise
|
2324.583
|
3487.519
|
2498.856
|
1876.617
|
1768.550
|
1732.979
|
2029.606
|
2217.914
|
3029.160
|
2043.667
|
2466.021
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.711
|
-1.031
|
-0.304
|
-0.117
|
— |
0.236
|
0.250
|
— | — | — | — | — | — |
No JSON data available for plots.