Hg_chrom7_TN10mRNA_14075
Organism: Heterodera glycines Gene Locus: chr7:5379581-5381334 Feature type: polypeptideProtein Sequence
Length: 146
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.035 | 0.637 | 0.747 | 0.472 | 0.685 | 0.878 | 0.652 | 1.712 | 1.218 | 1.851 | 1.038 | 1.209 | 0.381 | 0.263 | 1.957 | 0.881 | 0.674 | 1.972 | 0.0 | 0.806 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13281
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRNISALYAKLKNEKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.843
|
0.351
|
0.074
|
0.274
|
0.023
|
0.020
|
0.028
|
0.116
|
0.028
|
0.128
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011265
|
1.000
|
1.000
|
Hsc_gene_19645.t1
|
Hsc_gene_19645.t1
|
— | — |
KAI6240617.1 Ribonuclease P/MRP protein subunit family-containing protein [Aphelenchoides fujianensis];KAI6240673.1 Ribonuclease P/MRP protein subunit family-containing protein [Aphelenchoides fujianensis]
|
No
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0001682|GO:0030677|GO:0033204
|
GO:0008150_0.907|GO:0005575_0.902|GO:0110165_0.893|GO:0009987_0.845|GO:0003674_0.813|GO:0005622_0.810|GO:0016020_0.808|GO:0043226_0.765|GO:0043229_0.761|GO:0008152_0.759|GO:0009058_0.751|GO:0044237_0.750|GO:0044238_0.744|GO:0043170_0.732|GO:0044249_0.730|GO:0009059_0.721|GO:0006139_0.712|GO:0010467_0.711|GO:0043227_0.705|GO:0043231_0.702|GO:0034654_0.701|GO:0003824_0.699|GO:0090304_0.698|GO:0141187_0.694|GO:0016070_0.692|GO:0032774_0.691|GO:0006396_0.679|GO:0006399_0.675|GO:0008033_0.670|GO:0016787_0.668|GO:0016788_0.660|GO:0140640_0.657|GO:0004518_0.656|GO:0032991_0.656|GO:0140098_0.656|GO:0004519_0.655|GO:0004521_0.650|GO:0004526_0.650|GO:0004540_0.650|GO:0004549_0.650|GO:0016891_0.650|GO:0016893_0.650|GO:0140101_0.650|GO:0043228_0.618|GO:0043232_0.618|GO:0005634_0.598|GO:0031974_0.574|GO:0043233_0.574|GO:0070013_0.574|GO:0031981_0.565|GO:1990904_0.564|GO:1902494_0.562|GO:0140535_0.553|GO:0005730_0.551|GO:0140513_0.551|GO:0005655_0.540|GO:0030677_0.540|GO:0030681_0.540|GO:1902555_0.540|GO:1905348_0.540
|
IPR002759+7-106+|IPR016819+1-144+|IPR038085+1-108_1-110+|IPR052312+1-137+
|
— |
PF01900+7-106+Rpp14/Pop5_family
|
— |
PTHR48326+1-137+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-146
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.694
|
16298.280
|
10.852
|
14.500
|
28.082
|
7.534
|
44.521
|
55.479
|
19.863
|
8.219
|
47.260
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
351.117
|
240.813
|
254.224
|
276.578
|
403.808
|
498.802
|
417.679
|
400.119
|
266.847
|
401.492
|
343.787
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.231
|
0.512
|
0.321
|
-0.246
|
-0.425
|
— | — | — | — | — | — |
No JSON data available for plots.