Hg_chrom7_TN10mRNA_14076
Organism: Heterodera glycines Gene Locus: chr7:5383181-5384914 Feature type: polypeptideProtein Sequence
Length: 366
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.54 | 0.508 | 0.745 | 1.319 | 1.138 | 1.681 | 1.887 | 1.23 | 0.486 | 0.997 | 0.745 | 1.125 | 0.987 | 2.312 | 1.45 | 0.664 | 0.761 | 0.538 | 0.42 | 0.321 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13282
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.954
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
KKRK
|
— | — | — | — | — | — |
0.002
|
— | — |
0.050
|
0.081
|
0.004
|
0.146
|
0.613
|
0.212
|
0.409
|
0.004
|
0.541
|
0.218
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011266
|
1.000
|
1.000
|
Hsc_gene_19644.t2
|
Hsc_gene_19644.t1;Hsc_gene_19644.t2
|
— | — |
KAI1703382.1 collagen triple helix repeat (20 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR008160+209-267_274-332+|IPR050632+65-340+
|
— |
PF01391+209-267_274-332+Collagen_triple_helix_repeat_(20_copies)
|
— |
PTHR24637+65-340+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
151-366
|
1.000
|
1-150
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.972
|
39102.100
|
8.014
|
8.500
|
25.410
|
7.650
|
43.443
|
56.557
|
14.481
|
10.929
|
55.464
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
brown
|
723.065
|
910.087
|
1001.292
|
916.385
|
1864.717
|
1506.505
|
882.610
|
968.227
|
42.974
|
112.495
|
82.700
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.127
|
— |
0.992
|
— |
-0.762
|
-0.746
|
— | — |
4.608
|
4.340
|
— | — |
No JSON data available for plots.