Hg_chrom7_TN10mRNA_14077
Organism: Heterodera glycines Gene Locus: chr7:5384843-5386870 Feature type: polypeptideProtein Sequence
Length: 384
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.606 | 0.848 | 1.231 | 1.347 | 1.606 | 1.536 | 0.465 | 2.865 | 1.157 | 0.88 | 0.947 | 2.451 | 1.23 | 1.152 | 1.222 | 0.818 | 0.726 | 0.671 | 0.601 | 0.383 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13283
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKLGLGTDVAYWVDRIKRC
|
— | — | — | — | — | — |
0.000
|
— | — |
0.935
|
0.071
|
0.111
|
0.240
|
0.015
|
0.033
|
0.017
|
0.010
|
0.079
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011267
|
1.000
|
1.000
|
Hsc_gene_19643.t1
|
Hsc_gene_19643.t1
|
— | — |
KAI1704376.1 zinc finger protein 57 like protein [Ditylenchus destructor]
|
No
|
-0.460
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+73-95_73-100_75-95_101-123_101-128_103-123_129-151_129-156_131-151_264-287_266-287_296-318_296-323_298-318+|IPR036236+72-110_99-151_263-318+
|
SM00355+73-95_101-123_129-151_264-287_296-318+
|
PF00096+73-95_101-123_129-151+Zinc_finger,_C2H2_type
|
G3DSA:3.30.160.60:FF:000100+125-152+Zinc_finger_45-like|G3DSA:3.30.160.60:FF:002484+99-124+Protein_CBR-LSY-2
|
PTHR24390+56-319+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-46;314-384
|
1.000
|
47-313
|
2i13_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.701
|
44463.310
|
6.114
|
-5.000
|
34.375
|
12.240
|
54.167
|
45.833
|
17.969
|
16.406
|
44.010
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
821.075
|
1668.332
|
623.557
|
703.586
|
787.273
|
673.141
|
941.025
|
884.117
|
981.919
|
500.375
|
706.751
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.650
|
-1.383
|
0.283
|
— |
-0.211
|
0.494
|
0.290
|
0.232
|
— | — | — | — | — |
No JSON data available for plots.