Hg_chrom7_TN10mRNA_14078
Organism: Heterodera glycines Gene Locus: chr7:5387164-5389120 Feature type: polypeptideProtein Sequence
Length: 320
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.472 | 0.872 | 1.25 | 0.323 | 0.938 | 1.042 | 0.744 | 2.031 | 1.667 | 1.436 | 0.947 | 1.654 | 2.083 | 0.901 | 1.084 | 1.116 | 0.564 | 0.568 | 0.962 | 1.011 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13284
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.464
|
0.166
|
0.005
|
0.682
|
0.259
|
0.134
|
0.358
|
0.036
|
0.044
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011268
|
1.000
|
1.000
|
Hsc_gene_19642.t1
|
Hsc_gene_19642.t1
|
Y71H2AM.20b
|
Q2KJ44.1 Serine/threonine-protein phosphatase 2A activator [Bos taurus]
|
KAF7639773.1 Serine/threonine-protein phosphatase 2A activator [Meloidogyne graminicola]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019211
|
GO:0005575_0.870|GO:0008150_0.800|GO:0110165_0.793|GO:0005622_0.746|GO:0009987_0.730|GO:0016020_0.711|GO:0043226_0.698|GO:0043229_0.693|GO:0043227_0.677|GO:0043231_0.662|GO:0005737_0.598|GO:0003674_0.582|GO:0065007_0.548|GO:0050789_0.537|GO:0005634_0.527|GO:0050794_0.519
|
IPR004327+6-310_10-290_11-288_16-284+|IPR037218+10-291+|IPR043170+183-300+
|
— |
PF03095+11-288+Phosphotyrosyl_phosphate_activator_(PTPA)_protein
|
G3DSA:1.20.120.1150:FF:000002+183-298+Serine/threonine-protein_phosphatase_2A_activator
|
PTHR10012+10-290+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-320
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
37036.430
|
6.971
|
3.500
|
28.125
|
16.250
|
47.188
|
52.812
|
15.625
|
12.500
|
41.562
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
1160.048
|
941.807
|
944.380
|
786.726
|
864.656
|
933.359
|
1093.163
|
1152.494
|
302.450
|
2329.655
|
1460.853
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.226
|
-0.397
|
-0.154
|
— | — |
0.237
|
— | — |
-3.064
|
— | — | — | — |
No JSON data available for plots.