SCN Proteipedia

Hg_chrom7_TN10mRNA_14080

Organism: Heterodera glycines Gene Locus: chr7:5391424-5392242 Feature type: polypeptide

Protein Sequence

Length: 217

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.589	0.965	0.922	0.477	1.92	0.945	0.549	0.691	0.819	0.685	2.025	2.169	0.768	0.886	1.975	0.79	1.058	0.978	0.354	0.407	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13286	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	27-ppJ2_pJ2_J3_J4_Female_Male	0.996

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KVKK,KRMQRERQKETSRKRTA,KKSTVEEVRERFSMKKAQK,KKGNIRPPPKGPKIKREMLKPR	—	—	—	—	—	—	0.000	—	—	0.781	0.206	0.010	0.405	0.078	0.029	0.107	0.002	0.046	0.094

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011270	1.000	1.000	Hsc_gene_19637.t1	Hsc_gene_19637.t1	—	P34670.2 Putative zinc finger matrin-type protein snu-23 [Caenorhabditis elegans]	KAI3409993.1 U4/U6.U5 snRNP associated protein [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000398\|GO:0003676\|GO:0005681\|GO:0008270	GO:0005575_0.936\|GO:0110165_0.930\|GO:0005622_0.914\|GO:0043226_0.882\|GO:0043229_0.882\|GO:0016020_0.859\|GO:0043227_0.803\|GO:0043231_0.787\|GO:0005634_0.762\|GO:0032991_0.752\|GO:0008150_0.747\|GO:0009987_0.716\|GO:1990904_0.641\|GO:0008152_0.630\|GO:0009058_0.630\|GO:0009059_0.630\|GO:0010467_0.630\|GO:0043170_0.630\|GO:0044237_0.630\|GO:0044249_0.630\|GO:0006139_0.620\|GO:0044238_0.620\|GO:0090304_0.604\|GO:0034654_0.599\|GO:0141187_0.598\|GO:0140513_0.597\|GO:0016070_0.588\|GO:0032774_0.582\|GO:0120114_0.559\|GO:0030532_0.557\|GO:0097525_0.555\|GO:0005682_0.551\|GO:0031974_0.551\|GO:0031981_0.551\|GO:0043233_0.551\|GO:0070013_0.551\|GO:0006396_0.542\|GO:0005687_0.540\|GO:0005688_0.540\|GO:0046540_0.540\|GO:0071001_0.540\|GO:0097526_0.540\|GO:0120115_0.540\|GO:0016071_0.525\|GO:0006397_0.524\|GO:0000375_0.519\|GO:0000377_0.519\|GO:0000398_0.519\|GO:0008380_0.519	IPR003604+87-121+\|IPR022755+90-115+\|IPR036236+84-132+\|IPR040107+10-214+	SM00451+87-121+	PF12171+90-115+Zinc-finger_double-stranded_RNA-binding	G3DSA:3.30.160.60:FF:000282+79-122+Zinc_finger,_matrin-type_2	PTHR45986+10-214+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	full	1-217	0.000	—	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.543	25211.870	10.375	15.500	41.014	5.991	60.829	39.171	24.424	16.590	43.318

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	lightyellow	lightcyan	1446.237	905.536	1286.288	1075.167	1317.843	1247.132	1450.325	1453.993	2852.773	911.600	1743.531

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.277	0.111	-0.149	0.262	—	0.229	—	—	—	—	—	—	—

No JSON data available for plots.

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