Hg_chrom7_TN10mRNA_14081
Organism: Heterodera glycines Gene Locus: chr7:5392545-5394143 Feature type: polypeptideProtein Sequence
Length: 323
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.828 | 1.224 | 0.507 | 0.641 | 0.619 | 0.873 | 0.516 | 1.238 | 1.238 | 1.59 | 0.563 | 2.55 | 1.72 | 0.893 | 1.137 | 0.84 | 0.863 | 1.501 | 0.714 | 1.548 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13287
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
mitochondria
|
KRKL
|
10-56
|
0.788
|
— | — |
1-18
|
0.948
|
1.000
|
4.000
|
4.000
|
0.081
|
0.172
|
0.009
|
0.053
|
0.919
|
0.416
|
0.596
|
0.015
|
0.217
|
0.003
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011271
|
1.000
|
1.000
|
Hsc_gene_19636.t1
|
Hsc_gene_19636.t1
|
— |
P34669.2 Probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3 [Caenorhabditis elegans]
|
KAI1730512.1 OST3 / OST6 family, transporter family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.792|GO:0110165_0.792|GO:0016020_0.759|GO:0008150_0.755|GO:0005622_0.654|GO:0005737_0.653|GO:0043226_0.635|GO:0071944_0.622|GO:0043227_0.617|GO:0043229_0.612|GO:0005886_0.609|GO:0043231_0.602|GO:0006810_0.595|GO:0051179_0.595|GO:0051234_0.595|GO:0009987_0.546|GO:0006811_0.501
|
IPR021149+7-320_38-318+|IPR036249+38-162+
|
— |
PF04756+38-318+OST3_/_OST6_family,_transporter_family
|
G3DSA:3.40.30.10:FF:000009+23-179+Tumor_suppressor_candidate_3
|
PTHR12692+7-320+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-323
|
6s7t_H
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.791
|
36903.420
|
9.320
|
13.000
|
18.266
|
14.861
|
38.080
|
61.920
|
11.765
|
6.502
|
47.059
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
1762.521
|
1092.720
|
1514.742
|
1801.482
|
2295.325
|
2392.754
|
2257.614
|
1966.972
|
2227.913
|
1044.492
|
1551.672
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.242
|
0.584
|
0.359
|
0.317
|
— | — |
-0.386
|
0.341
|
— | — | — | — | — |