Hg_chrom7_TN10mRNA_14085
Organism: Heterodera glycines Gene Locus: chr7:5410114-5412446 Feature type: polypeptideProtein Sequence
Length: 375
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.899 | 0.682 | 0.63 | 0.644 | 0.667 | 0.957 | 0.571 | 0.4 | 0.83 | 1.838 | 1.051 | 3.451 | 1.407 | 1.282 | 1.197 | 0.914 | 0.962 | 0.768 | 2.462 | 0.706 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13291
|
— | — |
0.778
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.058
|
0.952
|
0.011
|
0.083
|
0.114
|
0.045
|
0.063
|
0.034
|
0.066
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011274
|
1.000
|
1.000
|
Hsc_gene_19632.t1
|
Hsc_gene_19632.t1
|
— |
Q8BGA9.1 Mitochondrial inner membrane protein OXA1L [Mus musculus]
|
KAI1722203.1 60Kd inner membrane protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0032977
|
GO:0005575_0.920|GO:0110165_0.916|GO:0016020_0.878|GO:0005622_0.818|GO:0043226_0.793|GO:0043229_0.776|GO:0005737_0.770|GO:0043227_0.759|GO:0043231_0.751|GO:0008150_0.650|GO:0009987_0.609|GO:0005739_0.565
|
IPR001708+74-333+|IPR028055+107-300+
|
— |
PF02096+107-300+60Kd_inner_membrane_protein
|
— |
PTHR12428+74-333+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
374-375
|
1.000
|
1-373
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
42856.860
|
10.313
|
21.500
|
21.067
|
11.467
|
40.000
|
60.000
|
13.600
|
7.467
|
44.800
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
1011.224
|
1269.340
|
1071.174
|
1338.048
|
1482.938
|
965.145
|
1291.450
|
787.935
|
254.149
|
1156.233
|
769.625
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.474
|
— |
0.429
|
0.116
|
-0.605
|
0.431
|
-0.396
|
0.856
|
— | — | — | — | — |
No JSON data available for plots.